Structure of Golgi alpha-mannosidase II: a target for inhibition of growth and metastasis of cancer cells.

van den Elsen, J.M; Kuntz, D.A; Rose, D.R.

Macromolecule Content

Unique protein chains: 1

1HTY

GOLGI ALPHA-MANNOSIDASE II

DOI: 10.2210/pdb1hty/pdb

Classification: HYDROLASE
Deposited: 2001-01-02 Released: 2002-01-02
Deposition author(s): van den Elsen, J.M.H., Kuntz, D.A., Rose, D.R.
Organism: Drosophila melanogaster
Expression System: Drosophila melanogaster
Mutation(s): 26

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.4 Å
R-Value Free: 0.210
R-Value Work: 0.193

wwPDB Validation 3D Report Full Report

Literature

Macromolecules

Classification: HYDROLASE

Total Structure Weight: 117969.02

Macromolecule Entities
Molecule	Chains	Length	Organism	Details
ALPHA-MANNOSIDASE II	A	1015	Drosophila melanogaster	EC#: 3.2.1.114 IUBMB Mutation: M45M, M52M, M124M, M149M, M167M, M193M, M212M, M263M, M264M, M290M, M428M, M433M, M441M, M490M, M499M, M501M, M557M, M627M, M769M, M792M, M835M, M865M, M962M, M985M, M1026M, M1034M Gene Name(s): alpha-Man-II GmII CG18802
Metabolic Pathways Maps: Reactions: ESCHER BiGG
Protein Feature View - UniProtKB AC: Q24451 UniProt Full Protein Feature View for Q24451 Find similar proteins by: Sequence \| Structure Show Detailed Protein Feature View for Q24451/1HTY

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
NAG Query on NAG Download SDF File Download CCD File	A	N-ACETYL-D-GLUCOSAMINE C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N	Poseview Image of NAG in 1HTY Help Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions. Source Information Interactions are determined by geometric criteria as described in K. Stierand, M. Rarey (2010), Drawing the PDB: Protein-ligand complexes in two dimensions, ACS Med. Chem. Lett., DOI: 10.1021/ml100164p. Ions and some metal complexes are excluded, as well as cases where no interaction profile could be generated. Poseview diagrams can be calculated for approximately 92% of the remaining complexes in the PDB. PoseView is developed at the Center for Bioinformatics Hamburg and jointly provided with BioSolveIT as a community service at the PDB. A stand-alone version is provided by BioSolveIT.	Ligand Explorer NGL Binding Pocket (JSmol) Electron Density (JSmol)
TRS Query on TRS Download SDF File Download CCD File	A	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER (Synonym) C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O	Poseview Image of TRS in 1HTY Help Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions. Source Information Interactions are determined by geometric criteria as described in K. Stierand, M. Rarey (2010), Drawing the PDB: Protein-ligand complexes in two dimensions, ACS Med. Chem. Lett., DOI: 10.1021/ml100164p. Ions and some metal complexes are excluded, as well as cases where no interaction profile could be generated. Poseview diagrams can be calculated for approximately 92% of the remaining complexes in the PDB. PoseView is developed at the Center for Bioinformatics Hamburg and jointly provided with BioSolveIT as a community service at the PDB. A stand-alone version is provided by BioSolveIT.	Ligand Explorer NGL Binding Pocket (JSmol) Electron Density (JSmol)
MRD Query on MRD Download SDF File Download CCD File	A	(4R)-2-METHYLPENTANE-2,4-DIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-RXMQYKEDSA-N	Poseview Image of MRD in 1HTY Help Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions. Source Information Interactions are determined by geometric criteria as described in K. Stierand, M. Rarey (2010), Drawing the PDB: Protein-ligand complexes in two dimensions, ACS Med. Chem. Lett., DOI: 10.1021/ml100164p. Ions and some metal complexes are excluded, as well as cases where no interaction profile could be generated. Poseview diagrams can be calculated for approximately 92% of the remaining complexes in the PDB. PoseView is developed at the Center for Bioinformatics Hamburg and jointly provided with BioSolveIT as a community service at the PDB. A stand-alone version is provided by BioSolveIT.	Ligand Explorer NGL Binding Pocket (JSmol) Electron Density (JSmol)
ZN Query on ZN Download SDF File Download CCD File	A	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N	Poseview Image of ZN in 1HTY Help Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions. Source Information Interactions are determined by geometric criteria as described in K. Stierand, M. Rarey (2010), Drawing the PDB: Protein-ligand complexes in two dimensions, ACS Med. Chem. Lett., DOI: 10.1021/ml100164p. Ions and some metal complexes are excluded, as well as cases where no interaction profile could be generated. Poseview diagrams can be calculated for approximately 92% of the remaining complexes in the PDB. PoseView is developed at the Center for Bioinformatics Hamburg and jointly provided with BioSolveIT as a community service at the PDB. A stand-alone version is provided by BioSolveIT.	Ligand Explorer NGL Binding Pocket (JSmol) Electron Density (JSmol)