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THE THREE-DIMENSIONAL STRUCTURE OF H-2DB AT 2.4 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ANTIGEN-DETERMINANT SELECTION
Biology and Chemistry Report
1HOC
  •   Structure Details   Hide

    Structure Keywords

    Keywords HISTOCOMPATIBILITY ANTIGEN
    Text HISTOCOMPATIBILITY ANTIGEN

    Polymeric Molecules

    Chain A
    Description CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31518.3 
    Source Method genetically manipulated  
    Chain B
    Description BETA 2-MICROGLOBULIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11704.5 
    Source Method genetically manipulated  
    Chain C
    Description 9-RESIDUE PEPTIDE 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1026.1 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A HA11_MOUSE P01899     
    B B2MG_MOUSE P01887     
    C NCAP_I82A4 P26091     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 4602    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B
    GO ID   Ontology GO Term Definition
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    2474   Antigen Processing and Presentation of Peptide Antigen Via Mhc Class I  The Process in Which an Antigen Presenting Cell Expresses a Peptide Antigen On Its Cell Surface in Association with an Mhc Class I Protein Complex. Class I Here Refers to Classical Class I Molecules. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    42612   Mhc Class I Protein Complex  A Transmembrane Protein Complex Composed of a Mhc Class I Alpha Chain and an Invariant Beta2 Microglobin Chain and with or Without a Bound Peptide Antigen. Class I Here Refers to Classical Class I Molecules. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C
    Scientific Name Influenza a virus (a/swine/hong kong/126/82(h3n2))  
    Genus Influenzavirus a
    Species Influenza a Virus
    Strain A/SWINE/HONG KONG/126/82 H3N2


    Chain B
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain A
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2 F1-F3|2 60.55 cM 12010     beta-2 microglobulin B2M    
    17 17 B1|17 18.61 cM 14964     histocompatibility 2, D region locus 1 H2-D1