Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords


    Polymeric Molecules

    Chain A
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 40328.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    AKG  2-OXOGLUTARIC ACID  C5 H6 O5   146.10  View 
    FE2  FE (II) ION  Fe   55.85  View 
    SO4  SULFATE ION  O4 S   96.06  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A HIF1N_HUMAN D3DR69     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    48471   Perinuclear Region of Cytoplasm  Cytoplasm Situated Near or Occurring Around the Nucleus. 
    5112   Notch Binding  Interacting Selectively and Non Covalently with the Notch (n) Protein a Surface Receptor. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    51059   Nf Kappab Binding  Interacting Selectively and Non Covalently with Nf Kappab a Transcription Factor For Eukaryotic RNA Polymerase Ii Promoters. 
    51213   Dioxygenase Activity  Catalysis of an Oxidation Reduction (redox) Reaction in Which Both Atoms of Oxygen From One Molecule of O2 Are Incorporated Into the (reduced) Product(s) of the Reaction. the Two Atoms of Oxygen May Be Distributed Between Two Different Products. 
    71532   Ankyrin Repeat Binding  Interacting Selectively and Non Covalently with an Ankyrin Repeat of a Protein. Ankyrin Repeats Are Tandemly Repeated Modules of About 33 Amino Acids; Each Repeat Folds Into a Helix Loop Helix Structure with a Beta Hairpin/loop Region Projecting Out From the Helices At a 90 Degree Angle and Repeats Stack to Form an L Shaped Structure. 

  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PET28A(+)

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10q24 55662     hypoxia inducible factor 1, alpha subunit inhibitor HIF1AN    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs2295778 LS-SNP   dbSNP   A 41 P - > A Beta Ladder 71% (Exposed) 10 102295836
    rs199949653 LS-SNP   dbSNP   A 90 F - > L Beta Ladder 3% (Buried) 10 102296260
    rs146360800 LS-SNP   dbSNP   A 129 V - > F Helix 17% (Intermediate) 10 102296375
    rs147628176 LS-SNP   dbSNP   A 160 M - > V Helix 67% (Exposed) 10 102300440
    rs201041421 LS-SNP   dbSNP   A 177 R - > H Turn 12% (Intermediate) 10 102300492
    rs200501474 LS-SNP   dbSNP   A 185 N - > S Coil 5% (Buried) 10 102300516
    rs199568792 LS-SNP   dbSNP   A 229 P - > A Beta 14% (Intermediate) 10 102304815
    rs138370363 LS-SNP   dbSNP   A 297 Y - > H Beta Ladder 0% (Buried) 10 102306333