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A NEW CRYSTAL FORM OF THE NK1 SPLICE VARIANT OF HGF/SF DEMONSTRATES EXTENSIVE HINGE MOVEMENT AND SUGGESTS THAT THE NK1 DIMER ORIGINATES BY DOMAIN SWAPPING
Biology and Chemistry Report
1GP9
  •   Structure Details   Hide

    Structure Keywords

    Keywords HORMONE/GROWTH FACTOR
    Text HORMONE/GROWTH FACTOR, HGF/SF, NK1, MET, DOMAIN SWAPPING, PROTEIN ENGINEERING, GROWTH FACTOR, KRINGLE, GLYCOPROTEIN, HORMONE-GROWTH FACTOR complex

    Polymeric Molecules

    Chain A,B,C,D
    Description HEPATOCYTE GROWTH FACTOR 
    Fragment NK1, RESIDUES 40-210 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20329.4 
    Source Method genetically manipulated  
    Entity Name SCATTER FACTOR, SF, HEPATOPOEITIN A 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EPE  4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID  C8 H18 N2 O4 S   238.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D HGF_HUMAN P14210     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Cell Type Fibroblast
    Host Scientific Name Yeast  
    Host Variant Gs115
    Host Strain Pichia Pastoris
    Host Vector Ppic 9k
    Host Plasmid Name PPIC-9K


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q21.1 3082     hepatocyte growth factor (hepapoietin A; scatter factor) HGF    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs138927646 LS-SNP   dbSNP   A 43 K - > R Beta Ladder 4% (Buried) 7 81392149
    rs150267054 LS-SNP   dbSNP   A 46 A - > V Beta Ladder 54% (Exposed) 7 81392140
    rs142659098 LS-SNP   dbSNP   A 61 T - > N Beta Ladder 56% (Exposed) 7 81392095
    rs189052337 LS-SNP   dbSNP   A 93 R - > T Turn 65% (Exposed) 7 81388097
    rs151170133 LS-SNP   dbSNP   A 116 F - > Y Beta Ladder 12% (Intermediate) 7 81388028
    rs141389863 LS-SNP   dbSNP   A 130 I - > T Bend 31% (Intermediate) 7 81386598
    rs17566 LS-SNP   dbSNP   A 153 S - > I Turn 55% (Exposed) 7 81386529
    rs73381183 LS-SNP   dbSNP   A 175 N - > S Turn 14% (Intermediate) 7 81381537
    rs148615168 LS-SNP   dbSNP   A 193 N - > S Bend 38% (Exposed) 7 81381483