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CRYSTAL STRUCTURES OF NK1-HEPARIN COMPLEXES REVEAL THE BASIS FOR NK1 ACTIVITY AND ENABLE ENGINEERING OF POTENT AGONISTS OF THE MET RECEPTOR
Biology and Chemistry Report
1GMO
  •   Structure Details   Hide

    Structure Keywords

    Keywords HORMONE
    Text HORMONE, GROWTH FACTOR

    Polymeric Molecules

    Chain A,B,C,D,E,F,G,H
    Description HEPATOCYTE GROWTH FACTOR 
    Fragment NK1 
    Mutation YES 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21173.4 
    Source Method genetically manipulated  
    Entity Name SCATTER FACTOR, SF, HEPATOPOEITIN A, HGF 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EPE  4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID  C8 H18 N2 O4 S   238.31  View 
    IDS  2-O-sulfo-alpha-L-idopyranuronic acid  C6 H10 O10 S   274.20  View 
    SGN  N,O6-DISULFO-GLUCOSAMINE  C6 H13 N O11 S2   339.30  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F,G,H HGF_HUMAN P14210     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F,G,H
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Pichia pastoris  
    Host Strain Gs115
    Host Vector Yeast
    Host Plasmid Name PPIC-9K


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q21.1 3082     hepatocyte growth factor (hepapoietin A; scatter factor) HGF    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs138927646 LS-SNP   dbSNP   A 43 K - > R Beta Ladder 2% (Buried) 7 81392149
    rs150267054 LS-SNP   dbSNP   A 46 A - > V Bend 67% (Exposed) 7 81392140
    rs142659098 LS-SNP   dbSNP   A 61 T - > N Beta Ladder 44% (Exposed) 7 81392095 IDS,SGN
    rs189052337 LS-SNP   dbSNP   A 93 R - > T Turn 74% (Exposed) 7 81388097 IDS,SGN
    rs151170133 LS-SNP   dbSNP   A 116 F - > Y Beta Ladder 19% (Intermediate) 7 81388028
    rs141389863 LS-SNP   dbSNP   A 130 I - > T Bend 53% (Exposed) 7 81386598
    rs17566 LS-SNP   dbSNP   A 153 S - > I Turn 73% (Exposed) 7 81386529
    rs73381183 LS-SNP   dbSNP   A 175 N - > S Turn 15% (Intermediate) 7 81381537
    rs148615168 LS-SNP   dbSNP   A 193 N - > S Coil 34% (Intermediate) 7 81381483