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HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2)
Biology and Chemistry Report
1GK4
  •   Structure Details   Hide

    Structure Keywords

    Keywords VIMENTIN
    Text VIMENTIN, INTERMEDIATE FILAMENT, DIMER, PARALLEL COILED COIL, HEPTAD REPEAT, STUTTER

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description VIMENTIN 
    Fragment CYS2, RESIDUES 328-411 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9920.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F VIME_HUMAN B0YJC2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F
    GO ID   Ontology GO Term Definition
    5882   Intermediate Filament  A Cytoskeletal Structure That Forms a Distinct Elongated Structure Characteristically 10 Nm in Diameter That Occurs in the Cytoplasm of Eukaryotic Cells. Intermediate Filaments Form a Fibrous System Composed of Chemically Heterogeneous Subunits and Involved in Mechanically Integrating the Various Components of the Cytoplasmic Space. Intermediate Filaments May Be Divided Into Five Chemically Distinct Classes: Type I Acidic Keratins; Type Ii Basic Keratins; Type Iii Including Desmin Vimentin and Others; Type Iv Neurofilaments and Related Filaments; and Type V Lamins. 
    5198   Structural Molecule Activity  The Action of a Molecule That Contributes to the Structural Integrity of a Complex or Assembly Within or Outside a Cell. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Plasmid Name PET-21D


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10p13 7431     vimentin VIM    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200772352 LS-SNP   dbSNP   A 332 A - > T Helix 2% (Buried) 10 17276803
    rs116370722 LS-SNP   dbSNP   A 345 R - > H Helix 50% (Exposed) 10 17277193
    rs200740172 LS-SNP   dbSNP   A 351 F - > V Helix 23% (Intermediate) 10 17277210
    rs139818786 LS-SNP   dbSNP   A 360 D - > E Helix 64% (Exposed) 10 17277239
    rs114322672 LS-SNP   dbSNP   A 362 I - > T Helix 11% (Intermediate) 10 17277244
    rs201530534 LS-SNP   dbSNP   A 378 R - > C Helix 44% (Exposed) 10 17277291
    rs35157876 LS-SNP   dbSNP   A 381 R - > H Helix 58% (Exposed) 10 17277301