1GDV

CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1GDV

Classification: ELECTRON TRANSPORT

Total Structure Weight: 9701.50

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C6 A 85 Pyropia yezoensis Gene Name(s): petJ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.199
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 49.26 α = 90.00
b = 49.26 β = 90.00
c = 83.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-06
  • Released Date: 2001-04-06
  • Deposition author(s): Yamada, S., Park, S.-Y., Shimizu, H., Shiro, Y., Oku, T.

Revision History

  • Version 1_0: 2001-04-06

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance