1G9R

CRYSTAL STRUCTURE OF GALACTOSYLTRANSFERASE LGTC IN COMPLEX WITH MN AND UDP-2F-GALACTOSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1G9R

Classification: TRANSFERASE

Total Structure Weight: 36794.29

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCOSYL TRANSFERASE A 311 Neisseria meningitidis EC#: 2.4.1 IUBMB
Mutation: M1M, C128S, M145M, M172M, C174S, M184M, M210M, M217M, M238M, S248P, G268A
Gene Name(s): lgtC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UPF
Query on UPF

A URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE
URIDINE-5'-MONOPHOSPHATE 2-DEOXY-2-FLUORO- GALACTOPYRANOSYL-MONOPHOSPHATE ESTER (Synonym)
C15 H23 F N2 O16 P2
NGTCPFGWXMBZEP-KBQKSTHMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UPF N/A in BindingDB
Ki: 2000 nM  BindingMOAD
Ki: 2000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.79 α = 90.00
b = 76.05 β = 90.00
c = 86.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-27
  • Released Date: 2001-02-14
  • Deposition author(s): Persson, K., Hoa, D.L., Diekelmann, M., Wakarchuk, W.W., Withers, S.G., Strynadka, N.C.J.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance