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CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME (HEL) COMPLEXED WITH THE MUTANT ANTI-HEL MONOCLONAL ANTIBODY D1.3(VLW92A)
Biology and Chemistry Report
1G7H
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE INHIBITOR/HYDROLASE
    Text HYDROLASE INHIBITOR/HYDROLASE, HYDROLASE INHIBITOR-HYDROLASE complex

    Polymeric Molecules

    Chain A
    Description ANTI-HEN EGG WHITE LYSOZYME MONOCLONAL ANTIBODY D1.3 
    Fragment LIGHT CHAIN 
    Mutation W92A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11585.9 
    Source Method genetically manipulated  
    Chain B
    Description ANTI-HEN EGG WHITE LYSOZYME MONOCLONAL ANTIBODY D1.3 
    Fragment HEAVY CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12857.4 
    Source Method genetically manipulated  
    Chain C
    Description LYSOZYME C 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14331.2 
    Source Method natural source  
    Entity Name HEL 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    B HVM44_MOUSE P01820     
    C LYSC_CHICK P00698     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    3.2.1.17        

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 137588    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B
    GO ID   Ontology GO Term Definition
    3823   Antigen Binding  Interacting Selectively and Non Covalently with an Antigen Any Substance Which Is Capable of Inducing a Specific Immune Response and of Reacting with the Products of That Response the Specific Antibody or Specifically Sensitized T Lymphocytes or Both. Binding May Counteract the Biological Activity of the Antigen. 
    Chain C
    GO ID   Ontology GO Term Definition
    1895   Retina Homeostasis  A Tissue Homeostatic Process Involved in the Maintenance of an Internal Equilibrium Within the Retina of the Eye Including Control of Cellular Proliferation and Death and Control of Metabolic Function. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    16998   Cell Wall Macromolecule Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of Macromolecules That Form Part of a Cell Wall. 
    19835   Cytolysis  The Rupture of Cell Membranes and the Loss of Cytoplasm. 
    42742   Defense Response to Bacterium  Reactions Triggered in Response to the Presence of a Bacterium That Act to Protect the Cell or Organism. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    5615   Extracellular Space  That Part of a Multicellular Organism Outside the Cells Proper Usually Taken to Be Outside the Plasma Membranes and Occupied by Fluid. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    3796   Lysozyme Activity  Catalysis of the Hydrolysis of the Beta (1 >4) Linkages Between N Acetylmuramic Acid and N Acetyl D Glucosamine Residues in a Peptidoglycan and Between N Acetyl D Glucosamine Residues in Chitodextrins. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16798   Hydrolase Activity Acting On Glycosyl Bonds  Catalysis of the Hydrolysis of Any Glycosyl Bond. 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 


     
  •   Gene Details   Hide

    Natural Source

    Chain C
    Common Name Chicken
    Scientific Name Gallus gallus  
    Genus Gallus

    Genetic Source

    Chain B
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Chain A
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 - 396218     lysozyme (renal amyloidosis) LYZ    
    12 12 F2|12 238412     immunoglobulin heavy variable 2-3 IGHV2-3