Macromolecules
Sequence Display for 1FVM

Classification: PEPTIDE / ANTIBIOTIC

Total Structure Weight: 11182.49

Macromolecule Entities
Molecule Chains Length Organism Details
VANCOMYCIN A, B, C..., D, E, FA, B, C, D, E, F 7 Amycolatopsis orientalis
DI-ACETYL-LYS-D-ALA-D-ALA G, H, I..., J, K, LG, H, I, J, K, L 3 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

A, B, C, D, E, F BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RER
Query on RER

A, B, C, D, E, F (1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl- alpha-L-arabino-hexopyranose
VANCOSAMINE (Synonym)
C7 H15 N O3
OIJZDPGKNVKVBL-WNJXEPBRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000204
Query on PRD_000204
A, B, C, D, E, F VANCOMYCIN Glycopeptide /
Antibiotic
Ligand Explorer
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
DLS
Query on DLS
G, H, I, J, K, L L-PEPTIDE LINKING C10 H18 N2 O4 LYS
DAL
Query on DAL
G, H, I, J, K, L D-PEPTIDE LINKING C3 H7 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.144
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 35.64 α = 90.00
b = 36.42 β = 90.00
c = 65.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-20
  • Released Date: 2000-11-01
  • Deposition author(s): Nitanai, Y., Kakoi, K., Aoki, K.

Revision History

  • 2011-06-14
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2011-07-27
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • 2012-12-12
    Type: Other