1FDT

HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 COMPLEXED WITH ESTRADIOL AND NADP+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1FDT

Classification: DEHYDROGENASE

Total Structure Weight: 36085.80

Macromolecule Entities
Molecule Chains Length Organism Details
17-BETA-HYDROXYSTEROID-DEHYDROGENASE A 327 Homo sapiens EC#: 1.1.1.62 IUBMB
Mutation: A301R
Gene Name(s): HSD17B1 Gene View E17KSR EDH17B1 EDH17B2 EDHB17 SDR28C1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EST
Query on EST

A ESTRADIOL
C18 H24 O2
VOXZDWNPVJITMN-ZBRFXRBCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.193
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 122.77 α = 90.00
b = 43.79 β = 99.47
c = 60.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-06-28
  • Released Date: 1997-02-12
  • Deposition author(s): Housset, D., Breton, R., Mazza, C., Fontecilla-Camps, J.-C.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance