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CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR128515
Biology and Chemistry Report
1EZQ
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text HYDROLASE

    Polymeric Molecules

    Chain A
    Description COAGULATION FACTOR XA 
    Fragment ACTIVATED FACTOR XA, HEAVY CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 28550.8 
    Source Method natural source  
    Chain B
    Description COAGULATION FACTOR XA 
    Fragment FACTOR X LIGHT CHAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15210.9 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
    RPR  3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER  C27 H30 N4 O3   458.55  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A FA10_HUMAN P00742     
    B FA10_HUMAN P00742     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    3.4.21.6        
    3.4.21.6        

    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Natural Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    13 13q34 2159     coagulation factor X F10    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs139359666 LS-SNP   dbSNP   A 31 A - > V Beta Ladder 0% (Buried) 13 113801694
    rs150027202 LS-SNP   dbSNP   A 32 L - > R Beta Ladder 3% (Buried) 13 113801697
    rs121964948 LS-SNP   dbSNP   A 68 R - > W Beta Ladder 1% (Buried) 13 113801804
    rs121964946 LS-SNP   dbSNP   A 70 G - > R Coil 5% (Buried) 13 113801810 CA
    rs149212700 LS-SNP   dbSNP   A 72 R - > Q Beta 11% (Intermediate) 13 113803236 CA
    rs145282353 LS-SNP   dbSNP   A 82 A - > V Beta Ladder 54% (Exposed) 13 113803266
    rs144679674 LS-SNP   dbSNP   A 97 K - > R Turn 94% (Exposed) 13 113803311 RPR
    rs121964942 LS-SNP   dbSNP   A 103 D - > N Coil 0% (Buried) 13 113803328
    rs121964947 LS-SNP   dbSNP   A 119 V - > M Coil 0% (Buried) 13 113803376
    rs201675411 LS-SNP   dbSNP   A 120 A - > V Coil 7% (Buried) 13 113803380
    rs201421020 LS-SNP   dbSNP   A 121 P - > A Coil 2% (Buried) 13 113803382
    rs104894392 LS-SNP   dbSNP   A 147 R - > C Turn 30% (Intermediate) 13 113803460 RPR
    rs143715673 LS-SNP   dbSNP   A 147 R - > H Turn 30% (Intermediate) 13 113803461 RPR
    rs142699098 LS-SNP   dbSNP   A 153 R - > P Bend 31% (Intermediate) 13 113803479
    rs121964941 LS-SNP   dbSNP   A 155 S - > P Coil 2% (Buried) 13 113803484
    rs121964940 LS-SNP   dbSNP   A 164 P - > S Coil 61% (Exposed) 13 113803511
    rs199778916 LS-SNP   dbSNP   A 171 C - > F Helix 19% (Intermediate) 13 113803533
    rs201301913 LS-SNP   dbSNP   A 205 V - > I Turn 54% (Exposed) 13 113803634
    rs199554547 LS-SNP   dbSNP   A 212 Y - > H Beta Ladder 0% (Buried) 13 113803655
    rs139031355 LS-SNP   dbSNP   A 213 F - > L Beta Ladder 4% (Buried) 13 113803660 RPR