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STRUCTURE OF THE AXIN RGS-HOMOLOGOUS DOMAIN IN COMPLEX WITH A SAMP REPEAT FROM APC
Biology and Chemistry Report
1EMU
  •   Structure Details   Hide

    Structure Keywords

    Keywords SIGNALING PROTEIN
    Text RGS domain, SIGNALING PROTEIN

    Polymeric Molecules

    Chain A
    Description AXIN 
    Fragment RGS-HOMOLOGOUS DOMAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15349.7 
    Source Method genetically manipulated  
    Chain B
    Description ADENOMATOUS POLYPOSIS COLI PROTEIN 
    Fragment THIRD SAMP REPEAT 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1767.0 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A AXIN1_HUMAN O15169     
    B APC_HUMAN D3DT03     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Common Name Eubacteria
    Host Scientific Name Bacteria  
    Host Vector Type Plasmid
    Host Plasmid Name PGEX-2T


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q21-q22 324     adenomatous polyposis coli APC    
    16 16p13.3 8312     axin 1 AXIN1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs140382475 LS-SNP   dbSNP   A 130 L - > M Turn 4% (Buried) 16 396749
    rs200407602 LS-SNP   dbSNP   A 131 D - > A Turn 71% (Exposed) 16 396745
    rs146736831 LS-SNP   dbSNP   A 137 S - > N Helix 55% (Exposed) 16 396727
    rs202238031 LS-SNP   dbSNP   A 169 S - > L 3/10 Helix 72% (Exposed) 16 396631
    rs143341222 LS-SNP   dbSNP   A 171 E - > K Helix 61% (Exposed) 16 396626
    rs148960948 LS-SNP   dbSNP   A 182 Y - > C Helix 12% (Intermediate) 16 396592
    rs35289539 LS-SNP   dbSNP   A 240 K - > M Turn 78% (Exposed) 16 396418