1DZT

RMLC FROM SALMONELLA TYPHIMURIUM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1DZT

Classification: ISOMERASE

Total Structure Weight: 42893.79

Macromolecule Entities
Molecule Chains Length Organism Details
DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE A, B 183 Salmonella enterica EC#: 5.1.3.13 IUBMB
Gene Name(s): rfbC rmlC STM2094
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TPE
Query on TPE

A 3'-O-ACETYLTHYMIDINE-(5' DIPHOSPHATE PHENYL ESTER)
C18 H22 N2 O12 P2
FBXZTUIVKSOQAY-ARFHVFGLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ATY
Query on ATY

B 3'-O-ACETYLTHYMIDINE-5'-DIPHOSPHATE
C12 H18 N2 O12 P2
UWSIAAWKEICIJY-IVZWLZJFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.232
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 71.80 α = 90.00
b = 71.80 β = 90.00
c = 184.45 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-07
  • Released Date: 2000-04-18
  • Deposition author(s): Naismith, J.H., Giraud, M.F.

Revision History

  • 2011-08-17
    Type: Atomic model, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance