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INTEGRIN ALPHA2 I DOMAIN / COLLAGEN COMPLEX
Biology and Chemistry Report
1DZI
  •   Structure Details   Hide

    Structure Keywords

    Keywords INTEGRIN
    Text INTEGRIN, COLLAGEN

    Polymeric Molecules

    Chain A
    Description INTEGRIN 
    Fragment ALPHA2 I DOMAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20359.2 
    Source Method genetically manipulated  
    Chain B,C,D
    Description COLLAGEN 
    Fragment TRIMERIC GPOGPOGFOGERGPOGPOGPO 21MERIC PEPTIDE 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 2013.2 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CO  COBALT (II) ION  Co   58.93  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A ITA2_HUMAN P17301     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q11.2 3673     integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) ITGA2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs55973669 LS-SNP   dbSNP   A 144 I - > V Beta Ladder 34% (Intermediate) 5 52344487
    rs200845740 LS-SNP   dbSNP   A 206 M - > I Helix 2% (Buried) 5 52347315
    rs142956915 LS-SNP   dbSNP   A 216 Y - > C Coil 70% (Exposed) 5 52347344
    rs41377544 LS-SNP   dbSNP   A 262 M - > L 3/10 Helix 31% (Intermediate) 5 52351459
    rs41272301 LS-SNP   dbSNP   A 290 A - > T Bend 68% (Exposed) 5 52351838
    rs139764836 LS-SNP   dbSNP   A 292 D - > G Helix 48% (Exposed) 5 52351845
    rs201919745 LS-SNP   dbSNP   A 302 A - > V Helix 34% (Intermediate) 5 52351875
    rs200220034 LS-SNP   dbSNP   A 304 A - > T Bend 4% (Buried) 5 52351880