1DNT

RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1DNT

Classification: DNA-RNA HYBRID

Total Structure Weight: 6178.31

Macromolecule Entities
Molecule Chains Length Organism Details
DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3') A, B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.54 α = 90.00
b = 43.72 β = 90.00
c = 45.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-16
  • Released Date: 2000-04-10
  • Deposition author(s): Robinson, H., Gao, Y.-G., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

Revision History

  • Version 1_0: 2000-04-10

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description, Structure summary