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An Information Portal to 105212 Biological Macromolecular Structures

CRYSTAL STRUCTURES OF BACILLUS SUBTILIS PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE: MOLECULAR BASIS OF ALLOSTERIC INHIBITION AND ACTIVATION.
Biology and Chemistry Report
1DKU
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text OPEN ALPHA-BETA STRUCTURE, DOMAIN DUPLICATION, PHOSPHORIBOSYLTRANSFERASE TYPE I FOLD, TRANSFERASE

    Polymeric Molecules

    Chain A,B
    Description PROTEIN (PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34910.5 
    Source Method genetically manipulated  
    Entity Name RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ABM  METHYL PHOSPHONIC ACID ADENOSINE ESTER  C11 H16 N5 O6 P   345.25  View 
    AP2  PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER  C11 H17 N5 O9 P2   425.23  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B KPRS_BACSU P14193     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc Catalytic Site(s)
    A B  2.7.6.1        
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6015   5 Phosphoribose 1 Diphosphate Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of 5 Phosphoribose 1 Diphosphate Also Known As 5 Phosphoribosyl 1 Pyrophosphate. 
    9156   Ribonucleoside Monophosphate Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of a Ribonucleoside Monophosphate a Compound Consisting of a Nucleobase Linked to a Ribose Sugar Esterified with Phosphate On the Sugar. 
    9165   Nucleotide Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Nucleotides Any Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Glycose Moiety; May Be Mono Di or Triphosphate; This Definition Includes Cyclic Nucleotides (nucleoside Cyclic Phosphates). 
    16310   Phosphorylation  The Process of Introducing a Phosphate Group Into a Molecule Usually with the Formation of a Phosphoric Ester a Phosphoric Anhydride or a Phosphoric Amide. 
    44249   Cellular Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Substances Carried Out by Individual Cells. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    287   Magnesium Ion Binding  Interacting Selectively and Non Covalently with Magnesium (mg) Ions. 
    4749   Ribose Phosphate Diphosphokinase Activity  Catalysis of the Reaction: D Ribose 5 Phosphate + ATP = 5 Phospho Alpha D Ribose 1 Diphosphate + AMP + 2 H(+). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16301   Kinase Activity  Catalysis of the Transfer of a Phosphate Group Usually From ATP to a Substrate Molecule. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Bacillus subtilis  
    Genus Bacillus
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Host Strain Ho773 Iv
    Host Vector Type Plasmid
    Host Plasmid Name PAB600


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 936985     ribose-phosphate pyrophosphokinase PRS