1DG6

CRYSTAL STRUCTURE OF APO2L/TRAIL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 1DG6

Classification: APOPTOSIS

Total Structure Weight: 22207.69

Macromolecule Entities
Molecule Chains Length Organism Details
APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL) A 191 Homo sapiens Fragment: TRIMERIC JELLY-ROLL DOMAIN OF APO2L
Mutation: D218A
Gene Name(s): TNFSF10 Gene View APO2L TRAIL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.141
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 66.43 α = 90.00
b = 66.43 β = 90.00
c = 197.73 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-23
  • Released Date: 2000-01-26
  • Deposition author(s): Hymowitz, S.G., O'ConnelL, M.P., Ultsch, M.H., de Vos, A.M., Kelley, R.F.

Revision History

  • Version 1_0: 2000-01-26

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance