1DEK

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.187

Literature

Macromolecules
Sequence Display for 1DEK

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 55557.27

Macromolecule Entities
Molecule Chains Length Organism Details
DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE A, B 241 Escherichia virus t4 EC#: 2.7.4.13 IUBMB
Mutation: C55X
Gene Name(s): 1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DGP
Query on DGP

A, B 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
LTFMZDNNPPEQNG-KVQBGUIXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
OCS
Query on OCS
A, B L-PEPTIDE LINKING C3 H7 N O5 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.187
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 155.20 α = 90.00
b = 58.50 β = 108.10
c = 75.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-01-09
  • Released Date: 1997-01-11
  • Deposition author(s): Teplyakov, A., Sebastiao, P.

Revision History

  • Version 1_0: 1997-01-11

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance