Macromolecules
Sequence Display for 1D9K

Classification: IMMUNE SYSTEM

Total Structure Weight: 141299.19

Macromolecule Entities
Molecule Chains Length Organism Details
T-CELL RECEPTOR D10 (ALPHA CHAIN) A, E 110 Mus musculus Mutation: C115S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T-CELL RECEPTOR D10 (BETA CHAIN) B, F 112 Mus musculus Mutation: E116BG, D116CS
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MHC I-AK A CHAIN (ALPHA CHAIN) C, G 183 Mus musculus Gene Name(s): H2-Aa
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MHC I-AK B CHAIN (BETA CHAIN) D, H 188 Mus musculus Mutation: N2G
Gene Name(s): H2-Ab1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CONALBUMIN PEPTIDE P, Q 16 Mus musculus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

C, D, G, H 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.247
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 97.60 α = 90.00
b = 345.30 β = 90.00
c = 97.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-28
  • Released Date: 1999-12-15
  • Deposition author(s): Reinherz, E.L., Tan, K., Tang, L., Kern, P., Liu, J.-H., Xiong, Y., Hussey, R.E., Smolyar, A., Hare, B., Zhang, R., Joachimiak, A., Chang, H.-C., Wagner, G., Wang, J.-H.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance
  • 2017-02-01
    Type: Structure summary