1D11

INTERACTIONS BETWEEN AN ANTHRACYCLINE ANTIBIOTIC AND DNA MOLECULAR STRUCTURE OF DAUNOMYCIN COMPLEXED TO D(CPGPTPAPCPG) AT 1.2-ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Observed: 0.175

Literature

Macromolecules
Sequence Display for 1D11

Classification: DNA

Total Structure Weight: 2359.73

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') A 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM1
Query on DM1

A DAUNOMYCIN
DAUNORUBICIN (Synonym)
C27 H29 N O10
STQGQHZAVUOBTE-VGBVRHCVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Observed: 0.175
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 27.86 α = 90.00
b = 27.86 β = 90.00
c = 52.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1989-10-20
  • Released Date: 1990-10-15
  • Deposition author(s): Wang, A.H.-J., Ughetto, G., Quigley, G.J., Rich, A.

Revision History

  • 2008-05-22
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-02-15
    Type: Structure summary