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N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP)
Biology and Chemistry Report
1CKL
  •   Structure Details   Hide

    Structure Keywords

    Keywords GLYCOPROTEIN
    Text VIRUS RECEPTOR, COMPLEMENT COFACTOR, SHORT CONSENSUS REPEAT, SCR, MEASLES VIRUS, GLYCOPROTEIN

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description PROTEIN (CD46) 
    Fragment N-TERMINAL TWO SCR DOMAINS 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14517.7 
    Source Method genetically manipulated  
    Entity Name MEMBRANE COFACTOR PROTEIN (MCP) 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BMA  BETA-D-MANNOSE  C6 H12 O6   180.16  View 
    CA  CALCIUM ION  Ca   40.08  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    MAN  ALPHA-D-MANNOSE  C6 H12 O6   180.16  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F MCP_HUMAN A0T1T0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Host Common Name Chinese Hamster
    Host Scientific Name Cricetulus griseus  
    Host Genus Cricetulus
    Host Cell Type Ovary
    Host Cell Line Cho Lec 3.2.8.1
    Host Subcellular Location Secreted
    Host Gene Human Cd46
    Host Vector Type Plasmid
    Description Expressed in Cho Lec 3.2.8.1 Cells (p. Stanley 1989 Mol. Cell. Biol. 9:377)


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q32 4179     CD46 molecule, complement regulatory protein CD46    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs121909591 LS-SNP   dbSNP   A 1 C - > Y Coil 0% (Buried) 1 207930365
    rs150429980 LS-SNP   dbSNP   A 32 K - > N Turn 102% (Exposed) 1 207930459
    rs200133631 LS-SNP   dbSNP   A 48 R - > W Turn 13% (Intermediate) 1 207930505
    rs115177125 LS-SNP   dbSNP   A 64 T - > A Beta 35% (Intermediate) 1 207930890
    rs116800126 LS-SNP   dbSNP   A 64 T - > I Beta 35% (Intermediate) 1 207930891