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An Information Portal to 107620 Biological Macromolecular Structures

CD1(MOUSE) ANTIGEN PRESENTING MOLECULE
Biology and Chemistry Report
1CD1
  •   Structure Details   Hide

    Structure Keywords

    Keywords CD1
    Text CD1, IMMUNOLOGY, MHC, TCR, GLYCOPROTEIN, IMMUNOGLOBULIN FOLD, T-CELL

    Polymeric Molecules

    Chain A,C
    Description CD1 
    Fragment ALPHA1, ALPHA2, ALPHA3, BETA2-MICROGLOBULIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36024.3 
    Source Method genetically manipulated  
    Entity Name MCD1D.1 
    Chain B,D
    Description CD1 
    Fragment ALPHA1, ALPHA2, ALPHA3, BETA2-MICROGLOBULIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11704.5 
    Source Method genetically manipulated  
    Entity Name MCD1D.1 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,C CD1D1_MOUSE P11609     
    B,D B2MG_MOUSE P01887     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,C
    GO ID   Ontology GO Term Definition
    1916   Positive Regulation of T Cell Mediated Cytotoxicity  Any Process That Activates or Increases the Frequency Rate or Extent of T Cell Mediated Cytotoxicity. 
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    6955   Immune Response  Any Immune System Process That Functions in the Calibrated Response of an Organism to a Potential Internal or Invasive Threat. 
    19882   Antigen Processing and Presentation  The Process in Which an Antigen Presenting Cell Expresses Antigen (peptide or Lipid) On Its Cell Surface in Association with an Mhc Protein Complex. 
    42102   Positive Regulation of T Cell Proliferation  Any Process That Activates or Increases the Rate or Extent of T Cell Proliferation. 
    43032   Positive Regulation of Macrophage Activation  Any Process That Stimulates Induces or Increases the Rate of Macrophage Activation. 
    45059   Positive Thymic T Cell Selection  The Process of Sparing Immature T Cells in the Thymus Which React with Self Mhc Protein Complexes with Low Affinity Levels From Apoptotic Death. 
    45078   Positive Regulation of Interferon Gamma Biosynthetic Process  Any Process That Activates or Increases the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Interferon Gamma. 
    45086   Positive Regulation of Interleukin 2 Biosynthetic Process  Any Process That Activates or Increases the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Interleukin 2. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    45404   Positive Regulation of Interleukin 4 Biosynthetic Process  Any Process That Activates or Increases the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Interleukin 4. 
    48006   Antigen Processing and Presentation Endogenous Lipid Antigen Via Mhc Class Ib  The Process in Which an Antigen Presenting Cell Expresses Lipid Antigen of Endogenous Origin in Association with an Mhc Class Ib Protein Complex On Its Cell Surface. Class Ib Here Refers to Non Classical Class I Molecules Such As Those of the Cd1 Family. 
    48007   Antigen Processing and Presentation Exogenous Lipid Antigen Via Mhc Class Ib  The Process in Which an Antigen Presenting Cell Expresses Lipid Antigen of Exogenous Origin in Association with an Mhc Class Ib Protein Complex On Its Cell Surface. Class Ib Here Refers to Non Classical Class I Molecules Such As Those of the Cd1 Family. 
    50776   Regulation of Immune Response  Any Process That Modulates the Frequency Rate or Extent of the Immune Response the Immunological Reaction of an Organism to an Immunogenic Stimulus. 
    51135   Positive Regulation of Nk T Cell Activation  Any Process That Activates or Increases the Frequency Rate or Extent of Natural Killer T Cell Activation. 
    51138   Positive Regulation of Nk T Cell Differentiation  Any Process That Activates or Increases the Frequency Rate or Extent of Natural Killer T Cell Differentiation. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5764   Lysosome  A Small Lytic Vacuole That Has Cell Cycle Independent Morphology and Is Found in Most Animal Cells and That Contains a Variety of Hydrolases Most of Which Have Their Maximal Activities in the Ph Range 5 6. the Contained Enzymes Display Latency If Properly Isolated. About 40 Different Lysosomal Hydrolases Are Known and Lysosomes Have a Great Variety of Morphologies and Functions. 
    5765   Lysosomal Membrane  The Lipid Bilayer Surrounding the Lysosome and Separating Its Contents From the Cell Cytoplasm. 
    5768   Endosome  A Membrane Bounded Organelle to Which Materials Ingested by Endocytosis Are Delivered. 
    5769   Early Endosome  A Membrane Bounded Organelle That Receives Incoming Material From Primary Endocytic Vesicles That Have Been Generated by Clathrin Dependent and Clathrin Independent Endocytosis; Vesicles Fuse with the Early Endosome to Deliver Cargo For Sorting Into Recycling or Degradation Pathways. 
    5770   Late Endosome  A Prelysosomal Endocytic Organelle Differentiated From Early Endosomes by Lower Lumenal Ph and Different Protein Composition. Late Endosomes Are More Spherical Than Early Endosomes and Are Mostly Juxtanuclear Being Concentrated Near the Microtubule Organizing Center. 
    5886   Plasma Membrane  The Membrane Surrounding a Cell That Separates the Cell From Its External Environment. It Consists of a Phospholipid Bilayer and Associated Proteins. 
    9897   External Side of Plasma Membrane  The Leaflet of the Plasma Membrane That Faces Away From the Cytoplasm and Any Proteins Embedded or Anchored in It or Attached to Its Surface. 
    9986   Cell Surface  The External Part of the Cell Wall And/or Plasma Membrane. 
    10008   Endosome Membrane  The Lipid Bilayer Surrounding an Endosome. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    16021   Integral Component of Membrane  The Component of a Membrane Consisting of Gene Products and Protein Complexes That Have Some Part That Penetrates At Least One Leaflet of the Membrane Bilayer. This Component Includes Gene Products That Are Buried in the Bilayer with No Exposure Outside the Bilayer. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    30881   Beta 2 Microglobulin Binding  Interacting Selectively and Non Covalently with Beta 2 Microglobulin. 
    30882   Lipid Antigen Binding  Interacting Selectively and Non Covalently with a Lipid Antigen. 
    30883   Endogenous Lipid Antigen Binding  Interacting Selectively and Non Covalently with an Endogenous Cellular Lipid Antigen. 
    30884   Exogenous Lipid Antigen Binding  Interacting Selectively and Non Covalently with an Exogenous Lipid Antigen (examples Include Microbial Lipids and Glycolipids). 
    42393   Histone Binding  Interacting Selectively and Non Covalently with a Histone Any of a Group of Water Soluble Proteins Found in Association with the DNA of Plant and Animal Chromosomes. They Are Involved in the Condensation and Coiling of Chromosomes During Cell Division and Have Also Been Implicated in Nonspecific Suppression of Gene Activity. 
    42608   T Cell Receptor Binding  Interacting Selectively and Non Covalently with a T Cell Receptor the Antigen Recognizing Receptor On the Surface of T Cells. 
    50839   Cell Adhesion Molecule Binding  Interacting Selectively and Non Covalently with a Cell Adhesion Molecule. 
    71723   Lipopeptide Binding  Interacting Selectively and Non Covalently with a Lipopeptide Any of a Group of Organic Compounds Comprising Two or More Amino Acids Linked by Peptide Bonds and Containing a Nonprotein Group Consisting of a Lipid or Lipids. 
    Chain B,D
    GO ID   Ontology GO Term Definition
    1895   Retina Homeostasis  A Tissue Homeostatic Process Involved in the Maintenance of an Internal Equilibrium Within the Retina of the Eye Including Control of Cellular Proliferation and Death and Control of Metabolic Function. 
    1916   Positive Regulation of T Cell Mediated Cytotoxicity  Any Process That Activates or Increases the Frequency Rate or Extent of T Cell Mediated Cytotoxicity. 
    2237   Response to Molecule of Bacterial Origin  Any Process That Results in a Change in State or Activity of an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus by Molecules of Bacterial Origin Such As Peptides Derived From Bacterial Flagellin. 
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    2474   Antigen Processing and Presentation of Peptide Antigen Via Mhc Class I  The Process in Which an Antigen Presenting Cell Expresses a Peptide Antigen On Its Cell Surface in Association with an Mhc Class I Protein Complex. Class I Here Refers to Classical Class I Molecules. 
    2481   Antigen Processing and Presentation of Exogenous Protein Antigen Via Mhc Class Ib Tap Dependent  The Process in Which an Antigen Presenting Cell Expresses a Peptide Antigen of Exogenous Origin On Its Cell Surface in Association with an Mhc Class Ib Protein Complex Following Intracellular Transport Via a Tap (transporter Associated with Antigen Processing) Pathway. the Peptide Is Typically a Fragment of a Larger Exogenous Protein Which Has Been Degraded Within the Cell and Is Dependent On Tap Transport From the Cytosol to Er For Association with the Mhc Class Ib Molecule. Class Ib Here Refers to Non Classical Class I Molecules Such As Those of the Hla E Gene Family. 
    6968   Cellular Defense Response  A Defense Response That Is Mediated by Cells. 
    33077   T Cell Differentiation in Thymus  The Process in Which a Precursor Cell Type Acquires the Specialized Features of a T Cell Via a Differentiation Pathway Dependent Upon Transit Through the Thymus. 
    42026   Protein Refolding  The Process Carried Out by a Cell That Restores the Biological Activity of an Unfolded or Misfolded Protein Using Helper Proteins Such As Chaperones. 
    42493   Response to Drug  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Drug Stimulus. a Drug Is a Substance Used in the Diagnosis Treatment or Prevention of a Disease. 
    46686   Response to Cadmium Ion  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Cadmium (cd) Ion Stimulus. 
    55072   Iron Ion Homeostasis  Any Process Involved in the Maintenance of an Internal Steady State of Iron Ions Within an Organism or Cell. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    5615   Extracellular Space  That Part of a Multicellular Organism Outside the Cells Proper Usually Taken to Be Outside the Plasma Membranes and Occupied by Fluid. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5794   Golgi Apparatus  A Compound Membranous Cytoplasmic Organelle of Eukaryotic Cells Consisting of Flattened Ribosome Free Vesicles Arranged in a More or Less Regular Stack. the Golgi Apparatus Differs From the Endoplasmic Reticulum in Often Having Slightly Thicker Membranes Appearing in Sections As a Characteristic Shallow Semicircle So That the Convex Side (cis or Entry Face) Abuts the Endoplasmic Reticulum Secretory Vesicles Emerging From the Concave Side (trans or Exit Face). in Vertebrate Cells There Is Usually One Such Organelle While in Invertebrates and Plants Where They Are Known Usually As Dictyosomes There May Be Several Scattered in the Cytoplasm. the Golgi Apparatus Processes Proteins Produced On the Ribosomes of the Rough Endoplasmic Reticulum; Such Processing Includes Modification of the Core Oligosaccharides of Glycoproteins and the Sorting and Packaging of Proteins For Transport to a Variety of Cellular Locations. Three Different Regions of the Golgi Are Now Recognized Both in Terms of Structure and Function: Cis in the Vicinity of the Cis Face Trans in the Vicinity of the Trans Face and Medial Lying Between the Cis and Trans Regions. 
    5886   Plasma Membrane  The Membrane Surrounding a Cell That Separates the Cell From Its External Environment. It Consists of a Phospholipid Bilayer and Associated Proteins. 
    5925   Focal Adhesion  Small Region On the Surface of a Cell That Anchors the Cell to the Extracellular Matrix and That Forms a Point of Termination of Actin Filaments. 
    9897   External Side of Plasma Membrane  The Leaflet of the Plasma Membrane That Faces Away From the Cytoplasm and Any Proteins Embedded or Anchored in It or Attached to Its Surface. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    30670   Phagocytic Vesicle Membrane  The Lipid Bilayer Surrounding a Phagocytic Vesicle. 
    42612   Mhc Class I Protein Complex  A Transmembrane Protein Complex Composed of a Mhc Class I Alpha Chain and an Invariant Beta2 Microglobin Chain and with or Without a Bound Peptide Antigen. Class I Here Refers to Classical Class I Molecules. 
    70062   Extracellular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,D
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Strain C57BL/6
    Cell Type Cortical Thymocytes Dendritic Cells
    Cell Line Sc2
    Subcellular Location Extracellular
    Gene cd1.1
    Host Common Name Fruit Fly
    Host Scientific Name Drosophila melanogaster  
    Host Genus Drosophila
    Host Gene Cd1.1
    Host Plasmid Name PRMHA-3


    Chain A,C
    Common Name House Mouse
    Scientific Name Mus musculus  
    Genus Mus
    Strain C57BL/6
    Cell Type Cortical Thymocytes Dendritic Cells
    Cell Line Sc2
    Subcellular Location Extracellular
    Gene cd1.1
    Host Common Name Fruit Fly
    Host Scientific Name Drosophila melanogaster  
    Host Genus Drosophila
    Host Gene Cd1.1
    Host Plasmid Name PRMHA-3


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2 60.55 cM|2 F1-F3 12010     beta-2 microglobulin B2M    
    3 3 F1|3 37.91 cM 12479     CD1d1 antigen CD1D1