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X-RAY CRYSTAL STRUCTURE OF C3D: A C3 FRAGMENT AND LIGAND FOR COMPLEMENT RECEPTOR 2
Biology and Chemistry Report
1C3D
  •   Structure Details   Hide

    Structure Keywords

    Keywords COMPLEMENT
    Text COMPLEMENT, C3, C3D, ALPHA-ALPHA BARREL

    Polymeric Molecules

    Chain A
    Description C3D 
    Mutation C17A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 32899.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CO3_HUMAN P01024     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Cell Line Bl21
    Subcellular Location Serum
    Host Scientific Name Escherichia coli bl21(de3)  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Strain Bl21 (de3)
    Host Vector Pet 15b
    Host Vector Type Pet
    Host Plasmid Name BL21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    19 19p13.3-p13.2 718     complement component 3 C3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs148698696 LS-SNP   dbSNP   A 39 E - > D Turn 91% (Exposed) 19 6694500
    rs146026441 LS-SNP   dbSNP   A 51 G - > R Helix 38% (Exposed) 19 6694466
    rs142393845 LS-SNP   dbSNP   A 67 R - > S Beta 35% (Intermediate) 19 6693473
    rs149259834 LS-SNP   dbSNP   A 93 F - > L Helix 1% (Buried) 19 6693067
    rs145346653 LS-SNP   dbSNP   A 93 F - > L Helix 1% (Buried) 19 6693069
    rs121909584 LS-SNP   dbSNP   A 101 A - > V Coil 83% (Exposed) 19 6693044
    rs121909585 LS-SNP   dbSNP   A 122 D - > N Turn 47% (Exposed) 19 6692982
    rs138900723 LS-SNP   dbSNP   A 141 R - > W 3/10 Helix 44% (Exposed) 19 6690729
    rs150237828 LS-SNP   dbSNP   A 151 T - > M Helix 0% (Buried) 19 6690698
    rs201865666 LS-SNP   dbSNP   A 161 A - > T Turn 0% (Buried) 19 6690669
    rs141031839 LS-SNP   dbSNP   A 183 L - > I Helix 0% (Buried) 19 6686877
    rs11569534 LS-SNP   dbSNP   A 231 G - > D Bend 69% (Exposed) 19 6686274
    rs147113695 LS-SNP   dbSNP   A 237 V - > M Helix 4% (Buried) 19 6686257
    rs149007163 LS-SNP   dbSNP   A 258 P - > L Helix 29% (Intermediate) 19 6686193
    rs147866119 LS-SNP   dbSNP   A 261 R - > H Helix 55% (Exposed) 19 6686184
    rs112747284 LS-SNP   dbSNP   A 274 G - > CR Turn 20% (Intermediate) 19 6686146