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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Biology and Chemistry Report
1C04
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME
    Text LOW RESOLUTION MODEL, LARGE RIBOSOME UNIT, RIBOSOME

    Polymeric Molecules

    Chain E
    Description 23S RRNA FRAGMENT 
    Fragment 23S RRNA 1151-1208 REGION 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 18725.3 
    Source Method natural source  
    Chain F
    Description 23S RRNA FRAGMENT 
    Fragment 23S RRNA HELIX 95 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 9376.7 
    Source Method natural source  
    Chain A
    Description RIBOSOMAL PROTEIN L2 
    Fragment CENTRAL RNA-BINDING DOMAINS 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 14931.0 
    Source Method natural source  
    Chain B
    Description RIBOSOMAL PROTEIN L6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19202.3 
    Source Method natural source  
    Chain C
    Description RIBOSOMAL PROTEIN L11 
    Fragment C-TERMINAL DOMAIN 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7116.4 
    Source Method natural source  
    Chain D
    Description RIBOSOMAL PROTEIN L14 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13369.7 
    Source Method natural source  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A RL2_GEOSE P04257     
    C RL11_HALMA P14122     
    D RL14_HALMA P22450     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6412   Translation  The Cellular Metabolic Process in Which a Protein Is Formed Using the Sequence of a Mature MRNA Molecule to Specify the Sequence of Amino Acids in a Polypeptide Chain. Translation Is Mediated by the Ribosome and Begins with the Formation of a Ternary Complex Between Aminoacylated Initiator Methionine TRNA GTP and Initiation Factor 2 Which Subsequently Associates with the Small Subunit of the Ribosome and an Mrna. Translation Ends with the Release of a Polypeptide Chain From the Ribosome. 
    5622   Intracellular  The Living Contents of a Cell; the Matter Contained Within (but Not Including) the Plasma Membrane Usually Taken to Exclude Large Vacuoles and Masses of Secretory or Ingested Material. in Eukaryotes It Includes the Nucleus and Cytoplasm. 
    5840   Ribosome  An Intracellular Organelle About 200 a in Diameter Consisting of RNA and Protein. It Is the Site of Protein Biosynthesis Resulting From Translation of Messenger RNA (mrna). It Consists of Two Subunits One Large and One Small Each Containing Only Protein and Rna. Both the Ribosome and Its Subunits Are Characterized by Their Sedimentation Coefficients Expressed in Svedberg Units (symbol: S). Hence the Prokaryotic Ribosome (70s) Comprises a Large (50s) Subunit and a Small (30s) Subunit While the Eukaryotic Ribosome (80s) Comprises a Large (60s) Subunit and a Small (40s) Subunit. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). Ribosomes From Prokaryotes Eukaryotes Mitochondria and Chloroplasts Have Characteristically Distinct Ribosomal Proteins. 
    15934   Large Ribosomal Subunit  The Larger of the Two Subunits of a Ribosome. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    3735   Structural Constituent of Ribosome  The Action of a Molecule That Contributes to the Structural Integrity of the Ribosome. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    Chain B
    GO ID   Ontology GO Term Definition
    6412   Translation  The Cellular Metabolic Process in Which a Protein Is Formed Using the Sequence of a Mature MRNA Molecule to Specify the Sequence of Amino Acids in a Polypeptide Chain. Translation Is Mediated by the Ribosome and Begins with the Formation of a Ternary Complex Between Aminoacylated Initiator Methionine TRNA GTP and Initiation Factor 2 Which Subsequently Associates with the Small Subunit of the Ribosome and an Mrna. Translation Ends with the Release of a Polypeptide Chain From the Ribosome. 
    5622   Intracellular  The Living Contents of a Cell; the Matter Contained Within (but Not Including) the Plasma Membrane Usually Taken to Exclude Large Vacuoles and Masses of Secretory or Ingested Material. in Eukaryotes It Includes the Nucleus and Cytoplasm. 
    5840   Ribosome  An Intracellular Organelle About 200 a in Diameter Consisting of RNA and Protein. It Is the Site of Protein Biosynthesis Resulting From Translation of Messenger RNA (mrna). It Consists of Two Subunits One Large and One Small Each Containing Only Protein and Rna. Both the Ribosome and Its Subunits Are Characterized by Their Sedimentation Coefficients Expressed in Svedberg Units (symbol: S). Hence the Prokaryotic Ribosome (70s) Comprises a Large (50s) Subunit and a Small (30s) Subunit While the Eukaryotic Ribosome (80s) Comprises a Large (60s) Subunit and a Small (40s) Subunit. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). Ribosomes From Prokaryotes Eukaryotes Mitochondria and Chloroplasts Have Characteristically Distinct Ribosomal Proteins. 
    3735   Structural Constituent of Ribosome  The Action of a Molecule That Contributes to the Structural Integrity of the Ribosome. 
    19843   RRNA Binding  Interacting Selectively and Non Covalently with Ribosomal Rna. 
    Chain C
    GO ID   Ontology GO Term Definition
    6412   Translation  The Cellular Metabolic Process in Which a Protein Is Formed Using the Sequence of a Mature MRNA Molecule to Specify the Sequence of Amino Acids in a Polypeptide Chain. Translation Is Mediated by the Ribosome and Begins with the Formation of a Ternary Complex Between Aminoacylated Initiator Methionine TRNA GTP and Initiation Factor 2 Which Subsequently Associates with the Small Subunit of the Ribosome and an Mrna. Translation Ends with the Release of a Polypeptide Chain From the Ribosome. 
    5840   Ribosome  An Intracellular Organelle About 200 a in Diameter Consisting of RNA and Protein. It Is the Site of Protein Biosynthesis Resulting From Translation of Messenger RNA (mrna). It Consists of Two Subunits One Large and One Small Each Containing Only Protein and Rna. Both the Ribosome and Its Subunits Are Characterized by Their Sedimentation Coefficients Expressed in Svedberg Units (symbol: S). Hence the Prokaryotic Ribosome (70s) Comprises a Large (50s) Subunit and a Small (30s) Subunit While the Eukaryotic Ribosome (80s) Comprises a Large (60s) Subunit and a Small (40s) Subunit. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). Ribosomes From Prokaryotes Eukaryotes Mitochondria and Chloroplasts Have Characteristically Distinct Ribosomal Proteins. 
    3735   Structural Constituent of Ribosome  The Action of a Molecule That Contributes to the Structural Integrity of the Ribosome. 
    Chain D
    GO ID   Ontology GO Term Definition
    6412   Translation  The Cellular Metabolic Process in Which a Protein Is Formed Using the Sequence of a Mature MRNA Molecule to Specify the Sequence of Amino Acids in a Polypeptide Chain. Translation Is Mediated by the Ribosome and Begins with the Formation of a Ternary Complex Between Aminoacylated Initiator Methionine TRNA GTP and Initiation Factor 2 Which Subsequently Associates with the Small Subunit of the Ribosome and an Mrna. Translation Ends with the Release of a Polypeptide Chain From the Ribosome. 
    5840   Ribosome  An Intracellular Organelle About 200 a in Diameter Consisting of RNA and Protein. It Is the Site of Protein Biosynthesis Resulting From Translation of Messenger RNA (mrna). It Consists of Two Subunits One Large and One Small Each Containing Only Protein and Rna. Both the Ribosome and Its Subunits Are Characterized by Their Sedimentation Coefficients Expressed in Svedberg Units (symbol: S). Hence the Prokaryotic Ribosome (70s) Comprises a Large (50s) Subunit and a Small (30s) Subunit While the Eukaryotic Ribosome (80s) Comprises a Large (60s) Subunit and a Small (40s) Subunit. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). Ribosomes From Prokaryotes Eukaryotes Mitochondria and Chloroplasts Have Characteristically Distinct Ribosomal Proteins. 
    15934   Large Ribosomal Subunit  The Larger of the Two Subunits of a Ribosome. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). 
    3735   Structural Constituent of Ribosome  The Action of a Molecule That Contributes to the Structural Integrity of the Ribosome. 


     
  •   Gene Details   Hide

    Natural Source

    Chain D
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula
    Chain C
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula
    Chain B
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula
    Chain A
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula
    Chain F
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula
    Chain E
    Scientific Name Haloarcula marismortui  
    Genus Haloarcula