1BKM

COCRYSTAL STRUCTURE OF D-AMINO ACID SUBSTITUTED PHOSPHOPEPTIDE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1BKM

Classification: TRANSFORMING PROTEIN

Total Structure Weight: 13419.97

Macromolecule Entities
Molecule Chains Length Organism Details
PP60 V-SRC TYROSINE KINASE TRANSFORMING PROTEIN A 113 Rous sarcoma virus EC#: 2.7.10.2 IUBMB
Fragment: DOMAIN
Mutation: R17A
Gene Name(s): V-SRC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1C5
Query on 1C5

A [[O-PHOSPHONO-N-ACETYL-TYROSINYL]-GLUTAMYL- 3[CYCLOHEXYLMETHYL]ALANINYL]-AMINE
C26 H39 N4 O10 P
MYZLOAXXVDGNMQ-FSSWDIPSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1C5 IC50: 1800 - 2000 nM (96) BindingDB

N/A in BindingMoad
IC50: 1800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 30.20 α = 90.00
b = 46.90 β = 90.00
c = 74.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-05-02
  • Released Date: 1997-07-07
  • Deposition author(s): Holland, D.R., Rubin, J.R.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance