An Information Portal to 105339 Biological Macromolecular Structures

Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords


    Polymeric Molecules

    Chain A,B
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21087.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CAC  CACODYLATE ION  C2 H6 As O2   136.99  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PEBP1_HUMAN P30086     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    10466   Negative Regulation of Peptidase Activity  Any Process That Stops or Reduces the Rate of Peptidase Activity the Hydrolysis of Peptide Bonds Within Proteins. 
    10951   Negative Regulation of Endopeptidase Activity  Any Process That Decreases the Frequency Rate or Extent of Endopeptidase Activity the Endohydrolysis of Peptide Bonds Within Proteins. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    4867   Serine Type Endopeptidase Inhibitor Activity  Stops Prevents or Reduces the Activity of Serine Type Endopeptidases Enzymes That Catalyze the Hydrolysis of Nonterminal Peptide Bonds in a Polypeptide Chain; a Serine Residue (and a Histidine Residue) Are At the Active Center of the Enzyme. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    8289   Lipid Binding  Interacting Selectively and Non Covalently with a Lipid. 
    8429   Phosphatidylethanolamine Binding  Interacting Selectively and Non Covalently with Phosphatidylethanolamine Any of a Class of Glycerophospholipids in Which a Phosphatidyl Group Is Esterified to the Hydroxyl Group of Ethanolamine. 
    19899   Enzyme Binding  Interacting Selectively and Non Covalently with Any Enzyme. 
    19901   Protein Kinase Binding  Interacting Selectively and Non Covalently with a Protein Kinase Any Enzyme That Catalyzes the Transfer of a Phosphate Group Usually From ATP to a Protein Substrate. 
    30414   Peptidase Inhibitor Activity  Stops Prevents or Reduces the Activity of a Peptidase Any Enzyme That Catalyzes the Hydrolysis Peptide Bonds. 
    44822   Poly(a) RNA Binding  Interacting Non Covalently with a Poly(a) RNA a RNA Molecule Which Has a Tail of Adenine Bases. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Genus Homo
    Subcellular Location Cytoplasm Membrane Associated
    Host Scientific Name Escherichia coli bl21  
    Host Genus Escherichia
    Host Species Escherichia Coli
    Host Subcellular Location Cytoplasm
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name PET-15B

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q24.23 5037     phosphatidylethanolamine binding protein 1 PEBP1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs11554097 LS-SNP   dbSNP   A 7 K - > R 3/10 Helix 61% (Exposed) 12 118574034
    rs189112488 LS-SNP   dbSNP   A 24 P - > Q Beta Ladder 17% (Intermediate) 12 118574085
    rs1050555 LS-SNP   dbSNP   A 26 H - > N Beta Ladder 37% (Exposed) 12 118574090
    rs1050558 LS-SNP   dbSNP   A 34 V - > A Coil 1% (Buried) 12 118574115
    rs138943811 LS-SNP   dbSNP   A 50 P - > H Coil 7% (Buried) 12 118575857
    rs199837201 LS-SNP   dbSNP   A 65 T - > I Beta Ladder 0% (Buried) 12 118575902
    rs181898300 LS-SNP   dbSNP   A 66 L - > F Beta Ladder 0% (Buried) 12 118575906
    rs55716409 LS-SNP   dbSNP   A 95 N - > S Turn 38% (Exposed) 12 118577294
    rs200767486 LS-SNP   dbSNP   A 100 G - > D Bend 10% (Intermediate) 12 118577309
    rs200070597 LS-SNP   dbSNP   A 101 T - > A Beta Ladder 11% (Intermediate) 12 118577311
    rs1050625 LS-SNP   dbSNP   A 145 H - > Y Turn 66% (Exposed) 12 118582477
    rs11554101 LS-SNP   dbSNP   A 155 R - > S Helix 6% (Buried) 12 118582507
    rs149641540 LS-SNP   dbSNP   A 165 A - > P Beta Ladder 0% (Buried) 12 118582537
    rs11554096 LS-SNP   dbSNP   A 183 Q - > P Helix 34% (Intermediate) 12 118582592