7ULH

Crystal Structure of a Short chain dehydrogenase from Mycobacterium avium 104

• PDB DOI: https://doi.org/10.2210/pdb7ULH/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Mycobacterium avium 104
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-04-04 Released: 2022-04-13 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.193 
• R-Value Work: 0.158 
• R-Value Observed: 0.159 

Literature

Crystal Structure of Crystal Structure of a Short chain dehydrogenase from Mycobacterium avium 104

Abendroth, J., Sankaran, B., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 240.92 kDa 
• Atom Count: 15,788 
• Modelled Residue Count: 1,984 
• Deposited Residue Count: 2,296 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short chain dehydrogenase	A, B, C, D, E, F, G	328	Mycobacterium avium 104	Mutation(s): 0  Gene Names: MAV_1937
UniProt
Find proteins for A0A0H2ZRP4 (Mycobacterium avium (strain 104)) Explore A0A0H2ZRP4  Go to UniProtKB:  A0A0H2ZRP4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.193 
• R-Value Work: 0.158 
• R-Value Observed: 0.159 
• Space Group: H 3 2
• Diffraction Data: https://doi.org/10.18430/M37ULH

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 241.81	α = 90
b = 241.81	β = 90
c = 241.96	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-04-13 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700059C

Revision History  

• Version 1.0: 2022-04-13
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description