7T35

Crystal Structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC from Klebsiella pneumoniae subsp. pneumoniae

• PDB DOI: https://doi.org/10.2210/pdb7T35/pdb

• Classification: HYDROLASE
• Organism(s): Klebsiella pneumoniae subsp. pneumoniae HS11286
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-12-06 Released: 2021-12-15 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 0.264 
• R-Value Work: 0.220 
• R-Value Observed: 0.225 

Literature

Crystal Structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC from Klebsiella pneumoniae subsp. pneumoniae

Abendroth, J., Mayclin, S.J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 21.46 kDa 
• Atom Count: 1,126 
• Modelled Residue Count: 156 
• Deposited Residue Count: 196 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC	A	196	Klebsiella pneumoniae subsp. pneumoniae HS11286	Mutation(s): 0  Gene Names: KPHS_47470 EC: 3.1.3.45
UniProt
Find proteins for A0A0H3GTS8 (Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)) Explore A0A0H3GTS8  Go to UniProtKB:  A0A0H3GTS8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 0.264 
• R-Value Work: 0.220 
• R-Value Observed: 0.225 
• Space Group: I 4 2 2
• Diffraction Data: https://doi.org/10.18430/M37T35

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.42	α = 90
b = 92.42	β = 90
c = 87.83	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing
PHENIX	model building
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-12-15 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700059C

Revision History  

• Version 1.0: 2021-12-15
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Data collection
• Version 1.2: 2024-04-03
  Changes: Refinement description