DapE enzyme from Shigella flexneri
Osipiuk, J., Endres, M., Becker, D.P., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Succinyl-diaminopimelate desuccinylase | 378 | Shigella flexneri 2a str. 301 | Mutation(s): 0  Gene Names: dapE EC: 3.5.1.18 | ||
UniProt | |||||
Find proteins for P0AED8 (Shigella flexneri) Explore P0AED8  Go to UniProtKB:  P0AED8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AED8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | C [auth A], L [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | K [auth A], U [auth B], V [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 180.141 | α = 90 |
b = 180.141 | β = 90 |
c = 200.091 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-3000 | data scaling |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
HKL-3000 | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201200026C |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |