6VW9

C-terminal regulatory domain of the chloride transporter KCC-1 from C. elegans, proteolyzed during crystallization


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the Regulatory Cytosolic Domain of a Eukaryotic Potassium-Chloride Cotransporter.

Zimanyi, C.M.Guo, M.Mahmood, A.Hendrickson, W.A.Hirsh, D.Cheung, J.

(2020) Structure 28: 1051-1060.e4

  • DOI: https://doi.org/10.1016/j.str.2020.06.009
  • Primary Citation of Related Structures:  
    6VW9, 6VWA

  • PubMed Abstract: 

    Cation-chloride cotransporters (CCCs) regulate the movement of chloride across membranes, controlling physiological processes from cell volume maintenance to neuronal signaling. Human CCCs are clinical targets for existing diuretics and potentially additional indications. Here, we report the X-ray crystal structure of the soluble C-terminal regulatory domain of a eukaryotic potassium-chloride cotransporter, Caenorhabditis elegans KCC-1. We observe a core α/β fold conserved among CCCs. Using structure-based sequence alignment, we analyze similarities and differences to the C-terminal domains of other CCC family members. We find that important regulatory motifs are in less-structured regions and residues important for dimerization are not widely conserved, suggesting that oligomerization and its effects may vary within the larger family. This snapshot of a eukaryotic KCC is a valuable starting point for the rational design of studies of cellular chloride regulation.


  • Organizational Affiliation

    New York Structural Biology Center, 89 Convent Avenue, New York, NY 10027, USA. Electronic address: czimanyi@nysbc.org.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
K+/Cl-Cotransporter233Caenorhabditis elegansMutation(s): 0 
Gene Names: kcc-1CELE_R13A1.2R13A1.2
UniProt
Find proteins for S6FCX2 (Caenorhabditis elegans)
Explore S6FCX2 
Go to UniProtKB:  S6FCX2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS6FCX2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
K+/Cl-Cotransporter71Caenorhabditis elegansMutation(s): 0 
Gene Names: kcc-1CELE_R13A1.2R13A1.2
UniProt
Find proteins for S6FCX2 (Caenorhabditis elegans)
Explore S6FCX2 
Go to UniProtKB:  S6FCX2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS6FCX2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.184 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.32α = 90
b = 65.546β = 97.174
c = 56.523γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
AutoSolphasing
Cootmodel building
ARP/wARPmodel building
BUCCANEERmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Simons Foundation Autism Research InitiativeUnited States534503

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-15
    Type: Initial release
  • Version 1.1: 2020-07-29
    Changes: Database references
  • Version 1.2: 2020-09-09
    Changes: Database references
  • Version 1.3: 2024-03-06
    Changes: Data collection, Database references