6QNU

Human Adenovirus type 3 fiber knob in complex with two copies of Desmoglein-2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

CryoEM structure of adenovirus type 3 fibre with desmoglein 2 shows an unusual mode of receptor engagement.

Vassal-Stermann, E.Effantin, G.Zubieta, C.Burmeister, W.Iseni, F.Wang, H.Lieber, A.Schoehn, G.Fender, P.

(2019) Nat Commun 10: 1181-1181

  • DOI: https://doi.org/10.1038/s41467-019-09220-y
  • Primary Citation of Related Structures:  
    6QNT, 6QNU

  • PubMed Abstract: 

    Attachment of human adenovirus (HAd) to the host cell is a critical step of infection. Initial attachment occurs via the adenoviral fibre knob protein and a cellular receptor. Here we report the cryo-electron microscopy (cryo-EM) structure of a <100 kDa non-symmetrical complex comprising the trimeric HAd type 3 fibre knob (HAd3K) and human desmoglein 2 (DSG2). The structure reveals a unique stoichiometry of 1:1 and 2:1 (DSG2: knob trimer) not previously observed for other HAd-receptor complexes. We demonstrate that mutating Asp261 in the fibre knob is sufficient to totally abolish receptor binding. These data shed new light on adenovirus infection strategies and provide insights for adenoviral vector development and structure-based design.


  • Organizational Affiliation

    Institut de Biologie Structurale (IBS), Université Grenoble Alpes, CNRS, CEA, 71 Avenue des Martyrs, 38042, Grenoble, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fiber protein
A, B, C
189Human adenovirus B3Mutation(s): 0 
Gene Names: L5
UniProt
Find proteins for P04501 (Human adenovirus B serotype 3)
Explore P04501 
Go to UniProtKB:  P04501
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04501
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Desmoglein-2
D, E
224Homo sapiensMutation(s): 0 
Gene Names: DSG2CDHF5
UniProt & NIH Common Fund Data Resources
Find proteins for Q14126 (Homo sapiens)
Explore Q14126 
Go to UniProtKB:  Q14126
PHAROS:  Q14126
GTEx:  ENSG00000046604 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14126
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2019-03-27 
  • Deposition Author(s): Effantin, G.

Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-18-CE11-0001

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-27
    Type: Initial release
  • Version 1.1: 2019-11-06
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-18
    Changes: Other
  • Version 1.3: 2020-09-30
    Changes: Data collection