Download MendeleyThe structure of Schistosoma mansoni Phosphodiesterase 4A in complex with cAMP
Brown, D.G., Schroeder, S., Gil, C., Munday, J., Koning, H., Siderius, M., Leurs, R.To be published.
6EZU
Schistosoma mansoni Phosphodiesterase 4A
- PDB DOI: https://doi.org/10.2210/pdb6EZU/pdb
- Classification: HYDROLASE
- Organism(s): Schistosoma mansoni
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-11-16 Released: 2018-12-12
- Funding Organization(s): European Union
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.233
- R-Value Work: 0.199
- R-Value Observed: 0.200
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphodiesterase | 371 | Schistosoma mansoni | Mutation(s): 0 Gene Names: Smp_134140 EC: 3.1.4 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AMP Query on AMP | H [auth B] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N |  | ||
| CMP (Subject of Investigation/LOI) Query on CMP | E [auth A] | ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE C10 H12 N5 O6 P IVOMOUWHDPKRLL-KQYNXXCUSA-N |  | ||
| ZN Query on ZN | C [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.233
- R-Value Work: 0.199
- R-Value Observed: 0.200
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.55 | α = 90 |
| b = 81.55 | β = 90 |
| c = 255.87 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| xia2 | data reduction |
| xia2 | data scaling |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-12-12 Deposition Author(s): Brown, D.G., Schroeder, S., Gil, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Union | United Kingdom | EC-FP7-602666-PDE4NPD |
Revision History (Full details and data files)
- Version 1.0: 2018-12-12
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description
