6A72

Copper transporter protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Tetrathiomolybdate induces dimerization of the metal-binding domain of ATPase and inhibits platination of the protein.

Fang, T.Chen, W.Sheng, Y.Yuan, S.Tang, Q.Li, G.Huang, G.Su, J.Zhang, X.Zang, J.Liu, Y.

(2019) Nat Commun 10: 186-186

  • DOI: https://doi.org/10.1038/s41467-018-08102-z
  • Primary Citation of Related Structures:  
    6A71, 6A72

  • PubMed Abstract: 

    Tetrathiomolybdate (TM) is used in the clinic for the treatment of Wilson's disease by targeting the cellular copper efflux protein ATP7B (WLN). Interestingly, both TM and WLN are associated with the efficacy of cisplatin, a widely used anticancer drug. Herein, we show that TM induces dimerization of the metal-binding domain of ATP7B (WLN4) through a unique sulfur-bridged Mo 2 S 6 O 2 cluster. TM expels copper ions from Cu-WLN4 and forms a copper-free dimer. The binding of Mo to cysteine residues of WLN4 inhibits platination of the protein. Reaction with multi-domain proteins indicates that TM can also connect two domains in the same molecule, forming Mo-bridged intramolecular crosslinks. These results provide structural and chemical insight into the mechanism of action of TM against ATPase, and reveal the molecular mechanism by which TM attenuates the cisplatin resistance mediated by copper efflux proteins.


  • Organizational Affiliation

    CAS Key Laboratory of Soft Matter Chemistry, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui, 230026, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP7B protein
A, B
72Homo sapiensMutation(s): 0 
Gene Names: ATP7B
UniProt & NIH Common Fund Data Resources
Find proteins for P35670 (Homo sapiens)
Explore P35670 
Go to UniProtKB:  P35670
PHAROS:  P35670
GTEx:  ENSG00000123191 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35670
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
9UX
Query on 9UX

Download Ideal Coordinates CCD File 
C [auth A]dioxo(di-mu-sulfide)dimolybdenum
H4 Mo2 O2 S2
CUCWWCHRPGBDLT-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
D [auth B]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.176 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.114α = 90
b = 87.582β = 90
c = 77.301γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2019-04-03 
  • Deposition Author(s): Chen, W.B.

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-03
    Type: Initial release
  • Version 1.1: 2019-08-28
    Changes: Data collection, Derived calculations
  • Version 1.2: 2023-11-22
    Changes: Data collection, Database references, Derived calculations, Refinement description