6TVP

Structure of Mycobacterium smegmatis alpha-maltose-1-phosphate synthase GlgM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the Mycobacterium smegmatis alpha-maltose-1-phosphate synthase GlgM.

Syson, K.Stevenson, C.E.M.Lawson, D.M.Bornemann, S.

(2020) Acta Crystallogr F Struct Biol Commun 76: 175-181

  • DOI: https://doi.org/10.1107/S2053230X20004343
  • Primary Citation of Related Structures:  
    6TVP

  • PubMed Abstract: 

    Mycobacterium tuberculosis produces glycogen (also known as α-glucan) to help evade human immunity. This pathogen uses the GlgE pathway to generate glycogen rather than the more well known glycogen synthase GlgA pathway, which is absent in this bacterium. Thus, the building block for this glucose polymer is α-maltose-1-phosphate rather than an NDP-glucose donor. One of the routes to α-maltose-1-phosphate is now known to involve the GlgA homologue GlgM, which uses ADP-glucose as a donor and α-glucose-1-phosphate as an acceptor. To help compare GlgA (a GT5 family member) with GlgM enzymes (GT4 family members), the X-ray crystal structure of GlgM from Mycobacterium smegmatis was solved to 1.9 Å resolution. While the enzymes shared a GT-B fold and several residues responsible for binding the donor substrate, they differed in some secondary-structural details, particularly in the N-terminal domain, which would be expected to be largely responsible for their different acceptor-substrate specificities.


  • Organizational Affiliation

    Biological Chemistry Department, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-maltose-1-phosphate synthase
A, B
401Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: glgMglgAMSMEG_5080MSMEI_4954
EC: 2.4.1.342
UniProt
Find proteins for A0R2E2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2E2 
Go to UniProtKB:  A0R2E2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R2E2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 135.371α = 90
b = 144.928β = 90
c = 46.468γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
Aimlessdata scaling
CRANK2phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/J004561/1

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-22
    Type: Initial release