6SUV

Horse cytochrome c complexed by octa-anionic calixarene

PDB DOI: https://doi.org/10.2210/pdb6SUV/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Equus caballus
Expression System: Equus caballus
Mutation(s): No

Deposited: 2019-09-16 Released: 2020-07-22
Deposition Author(s): Geremia, S., Brancatelli, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.237
R-Value Work: 0.170

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Probing the determinants of porosity in protein frameworks: co-crystals of cytochrome c and an octa-anionic calix[4]arene

Alex, J.M., Brancatelli, G., Volpi, S., Bonaccorso, C., Casnati, A., Geremia, S., Crowley, P.B.

(2020) Org Biomol Chem 18: 211-214

DOI: https://doi.org/10.1039/C9OB02275A

Macromolecule Content

Total Structure Weight: 108.06 kDa
Atom Count: 7,976
Modelled Residue Count: 832
Deposited Residue Count: 832
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c	A [auth AaA] B [auth BaB] C [auth CaC] D [auth DaD] E [auth EaE] A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	104	Equus caballus	Mutation(s): 0 Gene Names: CYCS, CYC
UniProt
Find proteins for P00004 (Equus caballus) Explore P00004 Go to UniProtKB: P00004
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00004
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LVQ (Subject of Investigation/LOI) Query on LVQ Download Ideal Coordinates CCD File SDF format, chain CA [auth GaG] SDF format, chain FA [auth HaH] SDF format, chain K [auth AaA] SDF format, chain N [auth BaB] SDF format, chain Q [auth CaC] SDF format, chain T [auth DaD] SDF format, chain W [auth EaE] SDF format, chain Z [auth FaF] MOL2 format, chain CA [auth GaG] MOL2 format, chain FA [auth HaH] MOL2 format, chain K [auth AaA] MOL2 format, chain N [auth BaB] MOL2 format, chain Q [auth CaC] MOL2 format, chain T [auth DaD] MOL2 format, chain W [auth EaE] MOL2 format, chain Z [auth FaF]	CA [auth GaG] FA [auth HaH] K [auth AaA] N [auth BaB] Q [auth CaC] CA [auth GaG], FA [auth HaH], K [auth AaA], N [auth BaB], Q [auth CaC], T [auth DaD], W [auth EaE], Z [auth FaF]	octa-anionic calixarene C₃₈ H₃₇ As Na O₂₅ S₄ DWJVHZAMZXSDQE-UHFFFAOYSA-M		Interactions Focus chain CA [auth GaG] Focus chain FA [auth HaH] Focus chain K [auth AaA] Focus chain N [auth BaB] Focus chain Q [auth CaC] Focus chain T [auth DaD] Focus chain W [auth EaE] Focus chain Z [auth FaF] Interactions & Density Focus chain CA [auth GaG] Focus chain FA [auth HaH] Focus chain K [auth AaA] Focus chain N [auth BaB] Focus chain Q [auth CaC] Focus chain T [auth DaD] Focus chain W [auth EaE] Focus chain Z [auth FaF]
HEC Query on HEC Download Ideal Coordinates CCD File SDF format, chain BA [auth GaG] SDF format, chain EA [auth HaH] SDF format, chain J [auth AaA] SDF format, chain M [auth BaB] SDF format, chain P [auth CaC] SDF format, chain S [auth DaD] SDF format, chain V [auth EaE] SDF format, chain Y [auth FaF] MOL2 format, chain BA [auth GaG] MOL2 format, chain EA [auth HaH] MOL2 format, chain J [auth AaA] MOL2 format, chain M [auth BaB] MOL2 format, chain P [auth CaC] MOL2 format, chain S [auth DaD] MOL2 format, chain V [auth EaE] MOL2 format, chain Y [auth FaF]	BA [auth GaG] EA [auth HaH] J [auth AaA] M [auth BaB] P [auth CaC] BA [auth GaG], EA [auth HaH], J [auth AaA], M [auth BaB], P [auth CaC], S [auth DaD], V [auth EaE], Y [auth FaF]	HEME C C₃₄ H₃₄ Fe N₄ O₄ HXQIYSLZKNYNMH-LJNAALQVSA-N		Interactions Focus chain BA [auth GaG] Focus chain EA [auth HaH] Focus chain J [auth AaA] Focus chain M [auth BaB] Focus chain P [auth CaC] Focus chain S [auth DaD] Focus chain V [auth EaE] Focus chain Y [auth FaF] Interactions & Density Focus chain BA [auth GaG] Focus chain EA [auth HaH] Focus chain J [auth AaA] Focus chain M [auth BaB] Focus chain P [auth CaC] Focus chain S [auth DaD] Focus chain V [auth EaE] Focus chain Y [auth FaF]
ACE Query on ACE Download Ideal Coordinates CCD File SDF format, chain AA [auth GaG] SDF format, chain DA [auth HaH] SDF format, chain I [auth AaA] SDF format, chain L [auth BaB] SDF format, chain O [auth CaC] SDF format, chain R [auth DaD] SDF format, chain U [auth EaE] SDF format, chain X [auth FaF] MOL2 format, chain AA [auth GaG] MOL2 format, chain DA [auth HaH] MOL2 format, chain I [auth AaA] MOL2 format, chain L [auth BaB] MOL2 format, chain O [auth CaC] MOL2 format, chain R [auth DaD] MOL2 format, chain U [auth EaE] MOL2 format, chain X [auth FaF]	AA [auth GaG] DA [auth HaH] I [auth AaA] L [auth BaB] O [auth CaC] AA [auth GaG], DA [auth HaH], I [auth AaA], L [auth BaB], O [auth CaC], R [auth DaD], U [auth EaE], X [auth FaF]	ACETYL GROUP C₂ H₄ O IKHGUXGNUITLKF-UHFFFAOYSA-N		Interactions Focus chain AA [auth GaG] Focus chain DA [auth HaH] Focus chain I [auth AaA] Focus chain L [auth BaB] Focus chain O [auth CaC] Focus chain R [auth DaD] Focus chain U [auth EaE] Focus chain X [auth FaF] Interactions & Density Focus chain AA [auth GaG] Focus chain DA [auth HaH] Focus chain I [auth AaA] Focus chain L [auth BaB] Focus chain O [auth CaC] Focus chain R [auth DaD] Focus chain U [auth EaE] Focus chain X [auth FaF]