Download MendeleyCrystal structure of 2-methylcitrate synthase (PrpC) from Pseudomonas aeruginosa in apo form.
Wijaya, A.J., Brear, P., Dolan, S.K., Welch, M.To be published.
6S6F
Crystal structure of 2-methylcitrate synthase (PrpC) from Pseudomonas aeruginosa in apo form.
- PDB DOI: https://doi.org/10.2210/pdb6S6F/pdb
- Classification: TRANSFERASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-07-03 Released: 2020-10-14
- Funding Organization(s): Biotechnology and Biological Sciences Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.53 Å
- R-Value Free: 0.213
- R-Value Work: 0.196
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Citrate synthase | 375 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: prpC, PA0795 |  | |
UniProt | |||||
Find proteins for Q9I5E3 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I5E3 Go to UniProtKB: Q9I5E3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9I5E3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth B], F [auth B], G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.53 Å
- R-Value Free: 0.213
- R-Value Work: 0.196
- R-Value Observed: 0.196
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.014 | α = 90 |
| b = 83.195 | β = 101.93 |
| c = 82.713 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| DIALS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-10-14 Deposition Author(s): Wijaya, A.J., Brear, P., Dolan, S.K., Welch, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council | United Kingdom | BB/M019411/1 |
| Biotechnology and Biological Sciences Research Council | United Kingdom | BB/R005435/1 |
Revision History (Full details and data files)
- Version 1.0: 2020-10-14
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
