6PCF

Human Coa6: W59C mutant protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report

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This is version 1.2 of the entry. See complete history


Literature

Structural and functional characterization of the mitochondrial complex IV assembly factor Coa6.

Maghool, S.Cooray, N.D.G.Stroud, D.A.Aragao, D.Ryan, M.T.Maher, M.J.

(2019) Life Sci Alliance 2

  • DOI: https://doi.org/10.26508/lsa.201900458
  • Primary Citation of Related Structures:  
    6PCE, 6PCF

  • PubMed Abstract: 

    Assembly factors play key roles in the biogenesis of many multi-subunit protein complexes regulating their stability, activity, and the incorporation of essential cofactors. The human assembly factor Coa6 participates in the biogenesis of the Cu A site in complex IV (cytochrome c oxidase, COX). Patients with mutations in Coa6 suffer from mitochondrial disease due to complex IV deficiency. Here, we present the crystal structures of human Coa6 and the pathogenic W59C Coa6-mutant protein. These structures show that Coa6 has a 3-helical bundle structure, with the first 2 helices tethered by disulfide bonds, one of which likely provides the copper-binding site. Disulfide-mediated oligomerization of the W59C Coa6 protein provides a structural explanation for the loss-of-function mutation.


  • Organizational Affiliation

    Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase assembly factor 6 homologA [auth B],
B [auth C],
C [auth A],
D
65Homo sapiensMutation(s): 1 
Gene Names: COA6C1orf31
UniProt & NIH Common Fund Data Resources
Find proteins for Q5JTJ3 (Homo sapiens)
Explore Q5JTJ3 
Go to UniProtKB:  Q5JTJ3
PHAROS:  Q5JTJ3
GTEx:  ENSG00000168275 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5JTJ3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.386α = 116.86
b = 47.823β = 98.68
c = 48.114γ = 104.26
Software Package:
Software NamePurpose
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDP140102746
National Health and Medical Research Council (NHMRC, Australia)AustraliaGNT1165217
National Health and Medical Research Council (NHMRC, Australia)AustraliaGNT1140851

Revision History  (Full details and data files)

  • Version 1.0: 2019-10-02
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description