6O1J
Alpha-L-fucosidase AlfC fucosyltransferase mutant N243A
- PDB DOI: https://doi.org/10.2210/pdb6O1J/pdb
- Classification: HYDROLASE
- Organism(s): Lacticaseibacillus casei
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2019-02-20 Released: 2020-02-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.243 
- R-Value Work: 0.230 
- R-Value Observed: 0.231 
wwPDB Validation   3D Report Full Report
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This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
AlfC | 345 | Lacticaseibacillus casei | Mutation(s): 1  EC: 3.2.1.51 | ||
UniProt | |||||
Find proteins for A0A422MHI3 (Lacticaseibacillus paracasei) Explore A0A422MHI3  Go to UniProtKB:  A0A422MHI3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A422MHI3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FUL Query on FUL | I [auth A] J [auth B] K [auth C] L [auth D] M [auth E] | beta-L-fucopyranose C6 H12 O5 SHZGCJCMOBCMKK-KGJVWPDLSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.243 
- R-Value Work: 0.230 
- R-Value Observed: 0.231 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.301 | α = 90 |
b = 259.921 | β = 118.81 |
c = 80.35 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
Aimless | data scaling |
MOLREP | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Structure Validation
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Entry History 
Deposition Data
- Released Date: 2020-02-26  Deposition Author(s): Klontz, E.H., Sundberg, E.J.
Revision History (Full details and data files)
- Version 1.0: 2020-02-26
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2020-12-16
Changes: Database references, Structure summary - Version 1.3: 2023-10-11
Changes: Data collection, Database references, Refinement description