6NEY

Crystal structure of TcBDF5, a bromodomain containing protein from Trypanosoma cruzi

• PDB DOI: https://doi.org/10.2210/pdb6NEY/pdb

• Classification: TRANSCRIPTION
• Organism(s): Trypanosoma cruzi
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-12-18 Released: 2019-03-20 
• Deposition Author(s): Loppnau, P., Dong, A., Tempel, W., Lin, Y.H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 0.267 
• R-Value Work: 0.224 
• R-Value Observed: 0.226 

Literature

Crystal structure of TcBDF5, a bromodomain containing protein from Trypanosoma cruzi

Loppnau, P., Dong, A., Tempel, W., Lin, Y.H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 15.05 kDa 
• Atom Count: 985 
• Modelled Residue Count: 125 
• Deposited Residue Count: 131 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A	131	Trypanosoma cruzi	Mutation(s): 0  Gene Names: C4B63_1g51
UniProt
Find proteins for A0A2V2W6E9 (Trypanosoma cruzi) Explore A0A2V2W6E9  Go to UniProtKB:  A0A2V2W6E9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 0.267 
• R-Value Work: 0.224 
• R-Value Observed: 0.226 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.887	α = 90
b = 70.428	β = 90
c = 26.644	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

Currently 6NEY does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 2019-03-20 
Deposition Author(s): Loppnau, P., Dong, A., Tempel, W., Lin, Y.H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Hui, R., Vedadi, M., Harding, R.J., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2019-03-20
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description