Download MendeleyB. pseudomallei KatG crystallized in the presence of furoyl hydrazide
Loewen, P.C.To be published.
6MQ0
B. pseudomallei KatG crystallized in the presence of furoyl hydrazide
- PDB DOI: https://doi.org/10.2210/pdb6MQ0/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia pseudomallei
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-10-09 Released: 2018-10-17
- Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.174
- R-Value Work: 0.145
- R-Value Observed: 0.146
wwPDB Validation 3D Report Full Report
Currently 6MQ0 does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Catalase-peroxidase | 728 | Burkholderia pseudomallei | Mutation(s): 0 Gene Names: katG, BOC42_10690, CXQ84_04250, DP46_2227, DP49_6664 EC: 1.11.1.21 |  | |
UniProt | |||||
Find proteins for Q939D2 (Burkholderia pseudomallei (strain K96243)) Explore Q939D2 Go to UniProtKB: Q939D2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q939D2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], J [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| MPD Query on MPD | H [auth A], I [auth A], M [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| PO4 Query on PO4 | G [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| OXY Query on OXY | F [auth A], L [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A], K [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.174
- R-Value Work: 0.145
- R-Value Observed: 0.146
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.46 | α = 90 |
| b = 115.43 | β = 90 |
| c = 174.6 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| REFMAC | phasing |
Structure Validation
Currently 6MQ0 does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2018-10-17 Deposition Author(s): Loewen, P.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | D9600-2012 |
Revision History (Full details and data files)
- Version 1.0: 2018-10-17
Type: Initial release - Version 1.1: 2020-01-08
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
