6MPL
Racemic M2-TM I39A crystallized from racemic detergent
- PDB DOI: https://doi.org/10.2210/pdb6MPL/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Influenza A virus (A/Hong Kong/156/97(H5N1))
- Mutation(s): Yes 
- Membrane Protein: Yes  PDBTM
- Deposited: 2018-10-07 Released: 2019-01-30 
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.261 
- R-Value Work: 0.249 
- R-Value Observed: 0.250 
wwPDB Validation   3D Report Full Report
Currently 6MPL does not have a validation slider image.
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Matrix protein 2 | 24 | Influenza A virus (A/Hong Kong/156/97(H5N1)) | Mutation(s): 4  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for O70632 (Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)) Explore O70632  Go to UniProtKB:  O70632 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O70632 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BOG Query on BOG | B [auth A], C [auth A], D [auth A] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N | |||
MPD Query on MPD | E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.261 
- R-Value Work: 0.249 
- R-Value Observed: 0.250 
- Space Group: P -1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 17.12 | α = 94.27 |
b = 18.84 | β = 90.02 |
c = 37.02 | γ = 109.51 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Structure Validation
View Full Validation Report
Currently 6MPL does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-01-30  Deposition Author(s): Kreitler, D.F., Yao, Z., Mortenson, D.E., Forest, K.T., Gellman, S.H.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM061238 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32GM00839 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32GM08293 |
Revision History (Full details and data files)
- Version 1.0: 2019-01-30
Type: Initial release - Version 1.1: 2019-02-13
Changes: Data collection, Database references - Version 1.2: 2020-01-01
Changes: Author supporting evidence - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2023-10-11
Changes: Data collection, Database references, Refinement description, Structure summary