6H7E

GEF regulatory domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Membranes prime the RapGEF EPAC1 to transduce cAMP signaling.

Sartre, C.Peurois, F.Ley, M.Kryszke, M.H.Zhang, W.Courilleau, D.Fischmeister, R.Ambroise, Y.Zeghouf, M.Cianferani, S.Ferrandez, Y.Cherfils, J.

(2023) Nat Commun 14: 4157-4157

  • DOI: https://doi.org/10.1038/s41467-023-39894-4
  • Primary Citation of Related Structures:  
    6H7E

  • PubMed Abstract: 

    EPAC1, a cAMP-activated GEF for Rap GTPases, is a major transducer of cAMP signaling and a therapeutic target in cardiac diseases. The recent discovery that cAMP is compartmentalized in membrane-proximal nanodomains challenged the current model of EPAC1 activation in the cytosol. Here, we discover that anionic membranes are a major component of EPAC1 activation. We find that anionic membranes activate EPAC1 independently of cAMP, increase its affinity for cAMP by two orders of magnitude, and synergize with cAMP to yield maximal GEF activity. In the cell cytosol, where cAMP concentration is low, EPAC1 must thus be primed by membranes to bind cAMP. Examination of the cell-active chemical CE3F4 in this framework further reveals that it targets only fully activated EPAC1. Together, our findings reformulate previous concepts of cAMP signaling through EPAC proteins, with important implications for drug discovery.


  • Organizational Affiliation

    Université Paris-Saclay, Ecole Normale Supérieure Paris-Saclay, CNRS, 91190, Gif-sur-Yvette, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
cDNA FLJ56134, highly similar to Rap guanine nucleotide exchange factor 3
A, B
270Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O95398 (Homo sapiens)
Explore O95398 
Go to UniProtKB:  O95398
PHAROS:  O95398
GTEx:  ENSG00000079337 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95398
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 
  • Space Group: I 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.698α = 90
b = 105.617β = 90.04
c = 160.556γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
BALBESphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
France--

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-19
    Type: Initial release
  • Version 1.1: 2023-12-20
    Changes: Advisory, Data collection, Database references