Download MendeleyA tyrosine mutation in E. coli flavodiiron protein increases radiation sensitivity in the crystal structure
Borges, P.T., Romao, C.V., Carrondo, M.A., Teixeira, M., Frazao, C.To be published.
6ETB
Aerobic S262Y mutation of E. coli FLRD core
- PDB DOI: https://doi.org/10.2210/pdb6ETB/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2017-10-26 Released: 2018-11-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.200
- R-Value Work: 0.200
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Anaerobic nitric oxide reductase flavorubredoxin | 412 | Escherichia coli K-12 | Mutation(s): 1 Gene Names: norV, flrD, ygaI, ygaJ, ygaK, b2710, JW2680 |  | |
UniProt | |||||
Find proteins for Q46877 (Escherichia coli (strain K12)) Explore Q46877 Go to UniProtKB: Q46877 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q46877 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | C [auth A], H [auth B] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| FE Query on FE | D [auth A], E [auth A], I [auth B], J [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| OXY Query on OXY | F [auth A], K [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |  | ||
| O Query on O | G [auth A], L [auth B] | OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.200
- R-Value Work: 0.200
- R-Value Observed: 0.200
- Space Group: I 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.383 | α = 90 |
| b = 64.407 | β = 91.09 |
| c = 147.254 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-11-07 Deposition Author(s): Borges, P.T., Romao, C.V., Carrondo, M.A., Teixeira, M., Frazao, C.
Revision History (Full details and data files)
- Version 1.0: 2018-11-07
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description
