6DRH

ADP-ribosyltransferase toxin/immunity pair


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.152 
  • R-Value Observed: 0.152 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins.

Ting, S.Y.Bosch, D.E.Mangiameli, S.M.Radey, M.C.Huang, S.Park, Y.J.Kelly, K.A.Filip, S.K.Goo, Y.A.Eng, J.K.Allaire, M.Veesler, D.Wiggins, P.A.Peterson, S.B.Mougous, J.D.

(2018) Cell 175: 1380

  • DOI: https://doi.org/10.1016/j.cell.2018.09.037
  • Primary Citation of Related Structures:  
    6DRE, 6DRH

  • PubMed Abstract: 

    ADP-ribosylation of proteins can profoundly impact their function and serves as an effective mechanism by which bacterial toxins impair eukaryotic cell processes. Here, we report the discovery that bacteria also employ ADP-ribosylating toxins against each other during interspecies competition. We demonstrate that one such toxin from Serratia proteamaculans interrupts the division of competing cells by modifying the essential bacterial tubulin-like protein, FtsZ, adjacent to its protomer interface, blocking its capacity to polymerize. The structure of the toxin in complex with its immunity determinant revealed two distinct modes of inhibition: active site occlusion and enzymatic removal of ADP-ribose modifications. We show that each is sufficient to support toxin immunity; however, the latter additionally provides unprecedented broad protection against non-cognate ADP-ribosylating effectors. Our findings reveal how an interbacterial arms race has produced a unique solution for safeguarding the integrity of bacterial cell division machinery against inactivating post-translational modifications.


  • Organizational Affiliation

    Department of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ADP-ribosyl-(Dinitrogen reductase) hydrolase
A, C, E, G
366Serratia proteamaculans 568Mutation(s): 0 
Gene Names: Spro_3018
EC: 3.2.2.24
UniProt
Find proteins for A8GG79 (Serratia proteamaculans (strain 568))
Explore A8GG79 
Go to UniProtKB:  A8GG79
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8GG79
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PAAR repeat-containing protein
B, D, F, H
188Serratia proteamaculans 568Mutation(s): 0 
Gene Names: Spro_3017
UniProt
Find proteins for A8GG78 (Serratia proteamaculans (strain 568))
Explore A8GG78 
Go to UniProtKB:  A8GG78
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8GG78
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.152 
  • R-Value Observed: 0.152 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.169α = 90
b = 151.006β = 90
c = 196.904γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-11-28
    Changes: Data collection, Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description