5WUE

Structural basis for conductance through TRIC cation channels


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for conductance through TRIC cation channels.

Su, M.Gao, F.Yuan, Q.Mao, Y.Li, D.L.Guo, Y.Yang, C.Wang, X.H.Bruni, R.Kloss, B.Zhao, H.Zeng, Y.Zhang, F.B.Marks, A.R.Hendrickson, W.A.Chen, Y.H.

(2017) Nat Commun 8: 15103-15103

  • DOI: https://doi.org/10.1038/ncomms15103
  • Primary Citation of Related Structures:  
    5WUC, 5WUD, 5WUE, 5WUF

  • PubMed Abstract: 

    Mammalian TRICs function as K + -permeable cation channels that provide counter ions for Ca 2+ handling in intracellular stores. Here we describe the structures of two prokaryotic homologues, archaeal SaTRIC and bacterial CpTRIC, showing that TRIC channels are symmetrical trimers with transmembrane pores through each protomer. Each pore holds a string of water molecules centred at kinked helices in two inverted-repeat triple-helix bundles (THBs). The pores are locked in a closed state by a hydrogen bond network at the C terminus of the THBs, which is lost when the pores assume an open conformation. The transition between the open and close states seems to be mediated by cation binding to conserved residues along the three-fold axis. Electrophysiology and mutagenesis studies show that prokaryotic TRICs have similar functional properties to those of mammalian TRICs and implicate the three-fold axis in the allosteric regulation of the channel.


  • Organizational Affiliation

    State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein237Sulfolobus acidocaldariusMutation(s): 0 
Gene Names: ATY89_00310ATZ20_03355
Membrane Entity: Yes 
UniProt
Find proteins for A0A0U3H1E6 (Sulfolobus acidocaldarius)
Explore A0A0U3H1E6 
Go to UniProtKB:  A0A0U3H1E6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U3H1E6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.872α = 90
b = 115.872β = 90
c = 134.753γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-06-21
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Refinement description