5R7X

PanDDA analysis group deposition of ground-state model of Human JMJD1B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

PanDDA analysis group deposition of ground-state model for Human JMJD1B screened against the DSPL Fragment Library

Snee, M.Nowak, R.Johansson, C.Burgess-Brown, N.A.Arrowsmith, C.H.Bountra, C.Edwards, A.M.Oppermann, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lysine-specific demethylase 3B
A, B
372Homo sapiensMutation(s): 0 
Gene Names: KDM3BC5orf7JHDM2BJMJD1BKIAA1082
EC: 1.14.11
UniProt & NIH Common Fund Data Resources
Find proteins for Q7LBC6 (Homo sapiens)
Explore Q7LBC6 
Go to UniProtKB:  Q7LBC6
PHAROS:  Q7LBC6
GTEx:  ENSG00000120733 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7LBC6
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.81α = 90
b = 93.79β = 107.96
c = 93.25γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-22
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Data collection, Database references