Download MendeleyStructure function studies of R. palustris RubisCO
Arbing, M.A., Shin, A., Cascio, D., Satagopan, S., Varaljay, V.A., Tabita, F.R.To be published.
5HQL
Structure function studies of R. palustris RubisCO (A47V-M331A mutant; CABP-bound; no expression tag)
- PDB DOI: https://doi.org/10.2210/pdb5HQL/pdb
- Classification: LYASE
- Organism(s): Rhodopseudomonas palustris
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2016-01-21 Released: 2017-01-25
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Department of Energy (DOE, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.53 Å
- R-Value Free: 0.259
- R-Value Work: 0.213
- R-Value Observed: 0.218
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribulose bisphosphate carboxylase | 461 | Rhodopseudomonas palustris | Mutation(s): 2 EC: 4.1.1.39 |  | |
UniProt | |||||
Find proteins for Q6N0W9 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N0W9 Go to UniProtKB: Q6N0W9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6N0W9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CAP Query on CAP | G [auth A] I [auth B] K [auth C] M [auth D] O [auth E] | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE C6 H14 O13 P2 ITHCSGCUQDMYAI-ZMIZWQJLSA-N |  | ||
| MG Query on MG | H [auth A] J [auth B] L [auth C] N [auth D] P [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.53 Å
- R-Value Free: 0.259
- R-Value Work: 0.213
- R-Value Observed: 0.218
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.443 | α = 108.13 |
| b = 100.491 | β = 113.66 |
| c = 103.965 | γ = 95.44 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-01-25 Deposition Author(s): Arbing, M.A., Shin, A., Cascio, D., Satagopan, S., North, J.A., Tabita, F.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM095742 |
| Department of Energy (DOE, United States) | United States | DE-FC02-02ER63421 |
Revision History (Full details and data files)
- Version 1.0: 2017-01-25
Type: Initial release - Version 1.1: 2017-09-27
Changes: Author supporting evidence - Version 1.2: 2018-03-21
Changes: Source and taxonomy - Version 1.3: 2019-12-04
Changes: Author supporting evidence - Version 1.4: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.5: 2023-11-15
Changes: Data collection
