Download MendeleyDps4 from Nostoc punctiforme in complex with Fe ions
Howe, C., Moparthi, V.K., Persson, K., Stensjo, K.To be published.
5HJH
Dps4 from Nostoc punctiforme in complex with Fe ions
- PDB DOI: https://doi.org/10.2210/pdb5HJH/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Nostoc punctiforme
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2016-01-13 Released: 2017-01-25
- Funding Organization(s): Swedish Energy Agency
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.193
- R-Value Work: 0.158
- R-Value Observed: 0.159
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ferritin, Dps family protein | 178 | Nostoc punctiforme | Mutation(s): 0 Gene Names: Npun_R5799 |  | |
UniProt | |||||
Find proteins for B2J981 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102)) Explore B2J981 Go to UniProtKB: B2J981 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2J981 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | F [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| FE Query on FE | E [auth A] G [auth A] H [auth A] I [auth B] J [auth C] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.193
- R-Value Work: 0.158
- R-Value Observed: 0.159
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.31 | α = 90 |
| b = 100.31 | β = 90 |
| c = 145.65 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-01-25 Deposition Author(s): Howe, C., Moparthi, V.K., Persson, K., Stensjo, K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Swedish Energy Agency | Sweden | 11674-5 |
Revision History (Full details and data files)
- Version 1.0: 2017-01-25
Type: Initial release - Version 1.1: 2017-09-13
Changes: Author supporting evidence - Version 1.2: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description
