5GMH
Crystal structure of monkey TLR7 in complex with R848
- PDB DOI: https://doi.org/10.2210/pdb5GMH/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Macaca mulatta
- Expression System: Drosophila
- Mutation(s): Yes 
- Deposited: 2016-07-14 Released: 2016-11-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.225 
- R-Value Work: 0.185 
- R-Value Observed: 0.187 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Toll-like receptor 7 | 817 | Macaca mulatta | Mutation(s): 4  Gene Names: TLR7 | ||
UniProt | |||||
Find proteins for B3Y653 (Macaca mulatta) Explore B3Y653  Go to UniProtKB:  B3Y653 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B3Y653 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RX8 Query on RX8 | EA [auth B], F [auth A] | 1-[4-amino-2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-1-yl]-2-methylpropan-2-ol C17 H22 N4 O2 BXNMTOQRYBFHNZ-UHFFFAOYSA-N | |||
NAG Query on NAG | FA [auth B] G [auth A] GA [auth B] H [auth A] HA [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | AA [auth A] BA [auth A] CA [auth A] DA [auth A] KA [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.225 
- R-Value Work: 0.185 
- R-Value Observed: 0.187 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 99.099 | α = 90 |
b = 140.093 | β = 90 |
c = 151.068 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2016-11-02  Deposition Author(s): Zhang, Z., Ohto, U., Shimizu, T.
Revision History (Full details and data files)
- Version 1.0: 2016-11-02
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection, Database references, Derived calculations - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary